Difference between revisions of "FlyBase:FlyBase Help Index"

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(Video Tutorials)
(Tools and Downloads Documentation)
 
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'''
 
'''
 
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
 
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part II: Using RNA-Seq Profile Search]
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*[https://www.youtube.com/watch?v=Ho_PZ4XB8y8&t=17s RNA-Seq Part II: Using RNA-Seq Profile Search]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
 
*[https://www.youtube.com/watch?v=jgCON15SiRo Finding related genes/alleles in FlyBase: Vocabularies]
 
*[https://www.youtube.com/watch?v=jgCON15SiRo Finding related genes/alleles in FlyBase: Vocabularies]
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'''
 
'''
 
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
 
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part II: Using RNA-Seq Profile Search]
+
*[https://www.youtube.com/watch?v=Ho_PZ4XB8y8&t=17s RNA-Seq Part II: Using RNA-Seq Profile Search]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
  
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*[https://www.youtube.com/watch?v=16SGlcASOL4 How to cite FlyBase]
 
*[https://www.youtube.com/watch?v=16SGlcASOL4 How to cite FlyBase]
  
== '''Data Documentation''' ==
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== '''Report Help''' ==
 
 
'''Curation'''
 
*[[FlyBase:Controlled vocabularies used by FlyBase | Controlled Vocabularies used by FlyBase]]
 
*[[FlyBase:Gene Ontology (GO) Annotation | Gene Ontology (GO) Annotation]]
 
*[[FlyBase:Nontraditional alleles | Nontraditional alleles]]
 
*[[FlyBase:Vectors and Constructs | Vectors and Constructs]]
 
  
 
'''Field by Field guides to FlyBase Reports'''
 
'''Field by Field guides to FlyBase Reports'''
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*[[FlyBase:Cell Line Report | Cell Line Report]]
 
*[[FlyBase:Cell Line Report | Cell Line Report]]
 
*[[FlyBase:Clone Report | Clone Report]]
 
*[[FlyBase:Clone Report | Clone Report]]
 +
*[[FlyBase:Vocabularies | CV (Controlled Vocabulary) Term Report]]
 +
*[[FlyBase:Dataset-Collection Report | Dataset/Collection Report]]
 
*[[FlyBase:Gene Report | Gene Report]]
 
*[[FlyBase:Gene Report | Gene Report]]
 +
*[[FlyBase:Gene Group Report | Gene Group Report]]
 
*[[FlyBase:Human Disease Report | Human Disease Model Report]]
 
*[[FlyBase:Human Disease Report | Human Disease Model Report]]
 
*[[FlyBase:Image Report | Image Report]]
 
*[[FlyBase:Image Report | Image Report]]
 
*[[FlyBase:Insertion Report | Insertion Report]]
 
*[[FlyBase:Insertion Report | Insertion Report]]
 
*[[FlyBase:Interaction Report | Interaction Report]]
 
*[[FlyBase:Interaction Report | Interaction Report]]
*[[FlyBase:Large Dataset Metadata Report | Large Dataset Metadata Report]]
 
 
*[[FlyBase:Natural Transposon Report | Natural Transposon Report]]
 
*[[FlyBase:Natural Transposon Report | Natural Transposon Report]]
 
*[[FlyBase:Person Report | Person Report]]
 
*[[FlyBase:Person Report | Person Report]]
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*[[FlyBase:Stock Report | Stock Report]]
 
*[[FlyBase:Stock Report | Stock Report]]
 
*[[FlyBase:Transcript Report | Transcript Report]]
 
*[[FlyBase:Transcript Report | Transcript Report]]
*[[FlyBase:Vocabularies | Vocabularies Term Report]]
 
  
'''Computed Fields'''
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*[[FlyBase:Computed cytological data | Computed Cytological data]]
*[[FlyBase:Computed cytological data | Computed Cytological Data]]
 
*[[FlyBase:Computed Feature type of genes | Computed Feature Type of Genes]]
 
  
'''Downloads'''
+
== '''Curation Documentation''' ==
*[[FlyBase:Downloads Overview | Downloads Overview]]
+
 
 +
*[[FlyBase:Controlled vocabularies used by FlyBase | Controlled Vocabularies used by FlyBase]]
 +
*[[FlyBase:Gene Model Annotation Guidelines | Gene Model Annotation Guidelines]]
 +
*[[FlyBase:Gene Ontology (GO) Annotation | Gene Ontology (GO) Annotation]]
 +
*[[FlyBase:Nontraditional alleles | Nontraditional alleles]]
 +
*[[FlyBase:Vectors and Constructs | Vectors and Constructs]]
  
== '''Tools Documentation''' ==
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== '''Tools and Downloads Documentation''' ==
  
 
'''Tools Overview'''
 
'''Tools Overview'''
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'''
 
'''
 
*[[FlyBase:Tools_Overview#Jump_to_Gene | Jump to Gene]]
 
*[[FlyBase:Tools_Overview#Jump_to_Gene | Jump to Gene]]
*[http://beta.flybase.org/cgi-bin/qb.pl QueryBuilder]
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*[http://{{flybaseorg}}/cgi-bin/qb.pl QueryBuilder]
 +
*[[FlyBase:QueryBuilder Help | QueryBuilder]]
 
*[[FlyBase:QuickSearch | QuickSearch]]
 
*[[FlyBase:QuickSearch | QuickSearch]]
*[http://beta.flybase.org/vocabularies Vocabularies]
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*[[FlyBase:Vocabularies Tool | Vocabularies Tool]]
  
 
'''Genomic/Map tools Help
 
'''Genomic/Map tools Help
 
'''
 
'''
 
* BLAST
 
* BLAST
* [http://beta.flybase.org/cytosearrch CytoSearch]
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* [[FlyBase:CytoSearch | CytoSearch]]
* [http://beta.flybase.org/featuremapper FeatureMapper]
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* [[FlyBase:Feature Mapper | Feature Mapper]]
 
* [[FlyBase:GBrowse | FlyBase GBrowse Help]]
 
* [[FlyBase:GBrowse | FlyBase GBrowse Help]]
 
* [[FlyBase:GBrowse Tracks | GBrowse Tracks]]
 
* [[FlyBase:GBrowse Tracks | GBrowse Tracks]]
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'''Retrieve/Convert Tools Help'''
 
'''Retrieve/Convert Tools Help'''
* [http://beta.flybase.org/batchdownload Batch Download]
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* [[FlyBase:Batch Download | Batch Download]]
* Coordinate Converter
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* [[FlyBase:Coordinate Converter | Coordinate Converter]]
* ID Converter  
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* [[FlyBase:ID_Converter | ID Converter ]]
 
* Sequence Downloader
 
* Sequence Downloader
  
 
'''RNA-Seq Tools Help'''
 
'''RNA-Seq Tools Help'''
*[http://beta.flybase.org/rnaseq/rnaseq RNA-Seq Overview]
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* [[FlyBase:RNA-Seq Overview | RNA-Seq Overview]]
*[http://beta.flybase.org/rnaseq/region RNA-Seq by Region]
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* [http://{{flybaseorg}}/rnaseq/region RNA-Seq by Region]
*[http://beta.flybase.org/rnaseq/profile_search RNA-Seq Profile]
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* [http://{{flybaseorg}}/rnaseq/profile_search RNA-Seq Profile]
*[http://beta.flybase.org/rnaseq/simsearch RNA-Seq Similarity]
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* [http://{{flybaseorg}}/rnaseq/simsearch RNA-Seq Similarity]
  
== '''Author Help''' ==
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'''Downloads'''
 +
*[[FlyBase:Downloads Overview | Downloads Overview]]
 +
 
 +
== '''Information for Authors''' ==
  
 
*[[FlyBase:Author Guidelines | Author Guidelines]]
 
*[[FlyBase:Author Guidelines | Author Guidelines]]
 +
*[[FlyBase:About#Citing_FlyBase | Citing FlyBase]]
 +
*Fast Track Your Paper
 +
*[http://beta.flybase.org/community FlyBase Community]
 +
*[[FlyBase:Gene Snapshots | Gene Snapshots]]
 +
*[[FlyBase:Personal communications to FlyBase | Personal Communications to FlyBase]]
 +
 +
== '''Other Help''' ==
 +
 +
*[[FlyBase:New to Flies? | New to Flies?]]
 +
*[[FlyBase:Nomenclature | Nomenclature]]
 
*[[FlyBase:Links to and from FlyBase | Links to and from FlyBase]]
 
*[[FlyBase:Links to and from FlyBase | Links to and from FlyBase]]
*[[FlyBase:Nomenclature | Nomenclature]]
+
*[[FlyBase:Community Advisory Group | FlyBase Community Advisory Group]]
*[[FlyBase:Personal communications to FlyBase | Personal Communications to FlyBase]]
 

Latest revision as of 21:12, 23 January 2018

Video Tutorials

Basic navigation series

Tools series

RNA-Seq series

FlyBase Guidelines

Report Help

Field by Field guides to FlyBase Reports

Curation Documentation

Tools and Downloads Documentation

Tools Overview

Query Tools Help

Genomic/Map tools Help

Retrieve/Convert Tools Help

RNA-Seq Tools Help

Downloads

Information for Authors

Other Help