Last Updated: 11 Dec. 2017
The Strain Report contains the information for an individual strain.
This is a field-by-field guide to the information provided in the Strain Report. FlyBase attributes data to the publication that reported it, so that users can easily refer back to the original publication if they wish. Thus, where possible in the fields below, the publication(s) that are the source of the information are listed, typically in parentheses to the right of the data.
General Information
| Symbol |
The valid symbol that is used in FlyBase.
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| Species |
The species of the strain, with the initial letter of the genus and the full species name listed.
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| Name |
The valid full name that is used in FlyBase for the strain.
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| Member of collection |
The FlyBase symbol used for a dataset/collection; provides link to the complete dataset/collection report.
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Genome Characterization
| Genome Sequence For |
Indicates whether whole genome or specific arm has been sequenced.
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| Genome Accession |
GenBank accession number and link.
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| Genome Assayed For |
GO term that reflects quantitative trait(s) assayed.
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| Comments |
Additional information concerning quantitative trait assay; free-text.
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Defined Genetic Components
| Homozygous Allele(s) |
The FlyBase symbol used for relevant allele; provides link to that report.
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| Heterozygous Allele(s) |
The FlyBase symbol used for relevant allele; provides link to that report.
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| Homozygous Aberration(s) / Balancer(s) |
The FlyBase symbol used for relevant aberration; provides link to that report.
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| Heterozygous Aberration(s) / Balancer(s) |
The FlyBase symbol used for relevant aberration; provides link to that report.
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| Homozygous Insertion(s) |
The FlyBase symbol used for relevant insertion; provides link to that report.
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| Heterozygous Insertion(s) |
The FlyBase symbol used for relevant insertion; provides link to that report.
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Phenotypic Data (Undefined Genetic Components)
Phenotype Not Assigned to an Allele
| Phenotypic Class |
A list of statements describing the overall phenotypic class of observed phenotype of the strain.
Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is observed in the strain, e.g. visible, lethal, circadian rhythm defective.
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| Phenotype Manifest In |
A list of the parts of the animal affected by the observed phenotype of the strain. These terms range from the entire animal to subcellular components and are often specific for a developmental stage. Body part and cell-type terms are from the Anatomy controlled vocabulary, while terms relating to parts of the cell are cellular component terms from the Gene Ontology controlled vocabulary.
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Phenotype Subjected to Selection
| Phenotypic Class |
A list of statements describing the overall phenotypic class of selected phenotype of the strain.
Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is selected in the strain, e.g. visible, lethal, circadian rhythm defective.
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| Phenotype Manifest In |
A list of the parts of the animal affected by the selected phenotype of the strain. These terms range from the entire animal to subcellular components and are often specific for a developmental stage. Body part and cell-type terms are from the Anatomy controlled vocabulary, while terms relating to parts of the cell are cellular component terms from the Gene Ontology controlled vocabulary.
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Assayed for Quantitative Trait
| Phenotypic Class |
A list of statements describing the overall phenotypic class of the quantitative trait being assayed.
Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is assayed in the strain, e.g. visible, lethal, circadian rhythm defective.
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| Phenotype Manifest In |
A list of the parts of the animal affected by the quantitative trait being assayed. These terms range from the entire animal to subcellular components and are often specific for a developmental stage. Body part and cell-type terms are from the Anatomy controlled vocabulary, while terms relating to parts of the cell are cellular component terms from the Gene Ontology controlled vocabulary.
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| Unassigned Phenotype Comments |
Additional information in free-text format.
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| Selected Phenotype Comments |
Additional information in free-text format.
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| General Phenotype Comments |
Additional information in free-text format.
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Origin and History
| Derived From Strain |
The FlyBase symbol used for strain; provides link to that report.
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| Member of Collection |
The FlyBase symbol used for a dataset/collection; provides link to the complete dataset/collection report.
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Natural Population Collection History
| Site, Country |
Self-explanatory; free text.
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| Site, State or Region |
Self-explanatory; free text.
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| Site, City or Place |
Self-explanatory; free text.
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| Site, Latitude |
Self-explanatory; free text.
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| Site, Longitude |
Self-explanatory; free text.
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| Collection Date |
Self-explanatory; free text.
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| Collection Season |
Self-explanatory; free text.
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| Collection Substrate |
Self-explanatory; free text.
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| Comments |
Additional information in free-text format.
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Natural Transposons
| P-element Status |
If specified, indicated as "present" or "absent."
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| hobo Status |
If specified, indicated as "present" or "absent."
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| Comment |
Additional information in free-text format.
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Endosymbionts
| Organism & Assay Conclusion |
For example, "Wolbachia present"
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| Comment |
Additional information in free-text format, including information on assay used to determine endosymbiont status.
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Miscellaneous free-text comments about the strain.
Stocks
A list of the stocks from the public Stock Centers that contain this strain; for each Stock Center, stock number and genotype are displayed. Clicking on the genotype will take you to the appropriate Stock Report.
References
A list of publications that discuss the strain, subdivided into fields by type of publication.