Difference between revisions of "FlyBase:FlyBase Help Index"

From FlyBase Wiki
Jump to navigation Jump to search
 
(18 intermediate revisions by 4 users not shown)
Line 1: Line 1:
 +
 +
== '''New to Flies''' ==
 +
 +
'''Useful Guides for Drosophila Research'''
 +
*[[FlyBase:New_to_Flies | New to Flies links]]
  
 
== '''Tweetorials''' ==
 
== '''Tweetorials''' ==
Line 21: Line 26:
 
'''Tools series
 
'''Tools series
 
'''
 
'''
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
+
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse] -- <span style="color:red"> Warning: The GBrowse genome viewer has been updated to JBrowse, but techniques shown here are still useful in JBrowse.</span>
 
*[https://www.youtube.com/watch?v=Ho_PZ4XB8y8&t=17s RNA-Seq Part II: Using RNA-Seq Profile Search]
 
*[https://www.youtube.com/watch?v=Ho_PZ4XB8y8&t=17s RNA-Seq Part II: Using RNA-Seq Profile Search]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
Line 31: Line 36:
 
'''RNA-Seq series
 
'''RNA-Seq series
 
'''
 
'''
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
+
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse] -- <span style="color:red"> Warning: The GBrowse genome viewer has been updated to JBrowse, but techniques shown here are still useful in JBrowse.</span>
 
*[https://www.youtube.com/watch?v=Ho_PZ4XB8y8&t=17s RNA-Seq Part II: Using RNA-Seq Profile Search]
 
*[https://www.youtube.com/watch?v=Ho_PZ4XB8y8&t=17s RNA-Seq Part II: Using RNA-Seq Profile Search]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
Line 48: Line 53:
 
*[[FlyBase:Balancer/Genotype variant Report | Balancer/Genotype variant Report]]
 
*[[FlyBase:Balancer/Genotype variant Report | Balancer/Genotype variant Report]]
 
*[[FlyBase:Cell Line Report | Cell Line Report]]
 
*[[FlyBase:Cell Line Report | Cell Line Report]]
 +
*[[FlyBase:Chemical | Chemical Report]]
 
*[[FlyBase:Clone Report | Clone Report]]
 
*[[FlyBase:Clone Report | Clone Report]]
 
*[[FlyBase:Vocabularies | CV (Controlled Vocabulary) Term Report]]
 
*[[FlyBase:Vocabularies | CV (Controlled Vocabulary) Term Report]]
Line 58: Line 64:
 
*[[FlyBase:Insertion Report | Insertion Report]]
 
*[[FlyBase:Insertion Report | Insertion Report]]
 
*[[FlyBase:Interaction Report | Interaction Report]]
 
*[[FlyBase:Interaction Report | Interaction Report]]
 +
*[[FlyBase:Macromolecular Complex Report | Macromolecular Complex Report]]
 
*[[FlyBase:Natural Transposon Report | Natural Transposon Report]]
 
*[[FlyBase:Natural Transposon Report | Natural Transposon Report]]
 
*[[FlyBase:Pathway_Report | Pathway Report]]
 
*[[FlyBase:Pathway_Report | Pathway Report]]
*[[FlyBase:Person Report | Person Report]]
 
 
*[[FlyBase:Polypeptide Report | Polypeptide Report]]
 
*[[FlyBase:Polypeptide Report | Polypeptide Report]]
 
*[[FlyBase:Recombinant Construct Report | Recombinant Construct Report]]
 
*[[FlyBase:Recombinant Construct Report | Recombinant Construct Report]]
Line 93: Line 99:
 
'''Genomic/Map Tools Help
 
'''Genomic/Map Tools Help
 
'''
 
'''
* BLAST
+
* [[FlyBase:Tools_Overview#BLAST | BLAST]]
 
* [[FlyBase:CytoSearch | CytoSearch]]
 
* [[FlyBase:CytoSearch | CytoSearch]]
 
* [[FlyBase:Feature Mapper | Feature Mapper]]
 
* [[FlyBase:Feature Mapper | Feature Mapper]]
 +
* [[FlyBase:JBrowse | FlyBase JBrowse Help]]
 +
* [[FlyBase:JBrowse Tracks | JBrowse Tracks]]
 +
* [[FlyBase:modENCODE data at FlyBase | modENCODE data at FlyBase]]
 +
 +
'''Tools for Archived Instances of FlyBase earlier than FB2022_05
 +
'''
 
* [[FlyBase:GBrowse | FlyBase GBrowse Help]]
 
* [[FlyBase:GBrowse | FlyBase GBrowse Help]]
 
* [[FlyBase:GBrowse Tracks | GBrowse Tracks]]
 
* [[FlyBase:GBrowse Tracks | GBrowse Tracks]]
* [[FlyBase:JBrowse | FlyBase JBrowse Help]]
 
* [[FlyBase:JBrowse Tracks | JBrowse Tracks]]
 
 
* [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]]
 
* [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]]
 
* [[FlyBase:Complete list of GBrowse/JBrowse Track Differences | Complete list of GBrowse/JBrowse Data Track Differences]]
 
* [[FlyBase:Complete list of GBrowse/JBrowse Track Differences | Complete list of GBrowse/JBrowse Data Track Differences]]
 
+
* [[FlyBase:Using FTP Archives | Using FTP Archives]]
  
 
'''Retrieve/Convert Tools Help'''
 
'''Retrieve/Convert Tools Help'''
Line 126: Line 136:
 
*[http://beta.flybase.org/community FlyBase Community]
 
*[http://beta.flybase.org/community FlyBase Community]
 
*[[FlyBase:Gene Snapshots | Gene Snapshots]]
 
*[[FlyBase:Gene Snapshots | Gene Snapshots]]
 +
*[[FlyBase:Nomenclature | Nomenclature]]
 
*[[FlyBase:Personal communications to FlyBase | Personal Communications to FlyBase]]
 
*[[FlyBase:Personal communications to FlyBase | Personal Communications to FlyBase]]
  
 
== '''Other Help''' ==
 
== '''Other Help''' ==
  
*[[FlyBase:New to Flies? | Useful links if you are new to Flies]]
+
*[[FlyBase:FAQ | FlyBase FAQ]]
*[[FlyBase:Nomenclature | Nomenclature]]
 
 
*[[FlyBase:Links to and from FlyBase | Links to and from FlyBase]]
 
*[[FlyBase:Links to and from FlyBase | Links to and from FlyBase]]
 
*[[FlyBase:FlyBase Website Access Fee FAQ | FlyBase Website Access Fee FAQ]]
 
*[[FlyBase:FlyBase Website Access Fee FAQ | FlyBase Website Access Fee FAQ]]
Line 138: Line 148:
 
*[[FlyBase:Fly Board| Fly Board]]
 
*[[FlyBase:Fly Board| Fly Board]]
 
*[[FlyBase:Papers with technical advances | Papers with technical advances]]
 
*[[FlyBase:Papers with technical advances | Papers with technical advances]]
 +
*[[FlyBase:CitationAndGuides | Papers to cite when using FlyBase]]

Latest revision as of 14:36, 25 June 2024

New to Flies

Useful Guides for Drosophila Research

Tweetorials

Topic-specific FlyBase Tweetorials

Video Tutorials

Basic navigation series

Tools series

RNA-Seq series

FlyBase Guidelines

Report Help

Field by Field guides to FlyBase Reports

Curation Documentation

Tools and Downloads Documentation

Tools Overview

Query Tools Help

Genomic/Map Tools Help

Tools for Archived Instances of FlyBase earlier than FB2022_05

Retrieve/Convert Tools Help

RNA-Seq Tools Help

Downloads

Information for Authors

Other Help