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  • FlyBase:Complete list of GBrowse/JBrowse Track Differences
    ...sers of an [http://flybase.org/downloads/archivedata archived] instance of FlyBase earlier than FB2022_05. ...release at [http://flybase.org/ flybase.org], please see our page about [[FlyBase:JBrowse]], the genome viewer that replaced GBrowse.
    2 KB (296 words) - 17:48, 14 December 2022
  • FlyBase:Aberration Report
    FlyBase attributes data to the publication that reported it, so that users can easi |'''Symbol''' || style="width: 80%;" | The valid symbol that is used in FlyBase for the aberration.
    17 KB (2,497 words) - 18:20, 20 December 2022
  • FlyBase:Interaction Report
    |FlyBase ID || The FlyBase identifier number of the physical interaction, used to uniquely identify th For each gene in the interaction, a link to the FlyBase "Interactions Browser" is provided that will display all physical or geneti
    5 KB (775 words) - 20:11, 3 January 2018
  • FlyBase:Batch Download
    ...Download tool provides access to data from a variety of specific fields in FlyBase reports for a specified list of symbols or IDs. The data from multiple fiel =Validating FlyBase symbols and IDs=
    4 KB (782 words) - 12:49, 15 April 2020
  • FlyBase:Recombinant Construct Report
    cDNA clones are described in the [[FlyBase:Clone Report|Clone Report]]. For commonly used recombinant constructs, FlyBase has curated detailed descriptions of the component DNA segments. For each i
    14 KB (2,088 words) - 09:34, 15 December 2021
  • Template:Gene-stub
    ...ub</span>. It has been seeded with an automatically generated summary from FlyBase through release FB2016_05. Please help improve this summary by logging in a
    720 bytes (106 words) - 22:04, 25 October 2016
  • FlyBase:Transgenics Drosophila Stocks Log
    ...ted. The information in the template is intended to facilitate curation by FlyBase and Stock Centers and to provide complete and accurate information of indiv
    767 bytes (111 words) - 18:43, 19 January 2024
  • FlyBase:Images
    ...ies|Antibodies]]</big>||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Neuroscience|Neuroscience]]</big> ...ical Advances]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:GSEA|Gene Set<br/> Enrichment Tools]]</big>
    9 KB (1,212 words) - 21:20, 11 October 2023
  • FlyBase:SequenceDownloader
    ...g of sequence data by genomic location for any of the sequenced species in FlyBase. To download sequence by genomic location, select your species, enter in o For ID mode you have to supply a valid FlyBase ID and a supported type. Supported types include FBgn, gene_extended, CDS,
    5 KB (777 words) - 17:05, 29 January 2018
  • FlyBase:Polypeptide Report
    |'''Symbol''' || style="width: 80%;" | The valid symbol that is used in FlyBase for the polypeptide. ...ies prefix is displayed wherever the polypeptide symbol is used throughout FlyBase. For D.melanogaster polypeptides, the species prefix is only displayed in t
    6 KB (993 words) - 17:45, 20 December 2022
  • FlyBase:Human Disease Model Report
    |'''Name'''|| style="width: 80%;" | The valid full name that is used in FlyBase for the Human Disease Model. |'''FlyBase ID'''|| The Primary FlyBase identifier number of the human disease, used to uniquely identify the Human
    21 KB (3,044 words) - 20:48, 2 January 2018
  • Help:State of the Wiki
    ...to contribute their expertise to FlyBase. The initial goal is to encourage FlyBase users to contribute expert, free-text gene summaries. A future goal can be === FlyBase gene page ===
    7 KB (1,120 words) - 19:22, 7 October 2016
  • FlyBase:Transcript Report
    ...s. Annotated ''D. melanogaster'' transcripts are transcripts identified by FlyBase annotators based on a variety of evidence including cDNA/ESTs, RNA-seq expr |'''Symbol''' || style="width: 80%;" | The valid symbol that is used in FlyBase for the transcript.
    9 KB (1,305 words) - 19:00, 20 December 2022
  • FlyBase:CytoSearch Help
    ..., and estimated cytology is used when only meiotic data are available. The FlyBase correspondence tables for cytological and sequence level maps are used to e ...aberration, and stock symbols on the results page link to their respective FlyBase reports. If multiple stocks are available, the number of stocks is shown, w
    3 KB (425 words) - 17:48, 20 December 2022
  • FlyBase:Computed cytological data
    ...nking sequence) have an inferred cytological location which is computed by FlyBase based on their sequence location. FlyBase currently only computes cytological data in this way for objects that have
    11 KB (1,834 words) - 21:55, 20 December 2022
  • FlyBase:Request for Fly Board Nominations
    ...oductive relationship between the research community and resources such as FlyBase, the Drosophila Genome Resource Center, groups heading efforts to develop b ...to the Fly Board for three additional years after their term ends. (See [[FlyBase:Fly_Board#Rules_of_Charter | '''Responsibilities of the Drosophila Board Pr
    4 KB (593 words) - 19:41, 31 May 2019
  • FlyBase:Frequently Asked Questions
    == How can I obtain a stock listed in FlyBase? == ...-mail address is included in the &quot;To Request Stock&quot; field of the FlyBase Stock Report.
    11 KB (1,798 words) - 16:15, 12 June 2014
  • FlyBase:JBrowse
    D. melanogaster is the only genome available for viewing with JBrowse in FlyBase. To select a specific region of the genome to view, enter a symbol, FlyBase ID, or sequence location in the coordinate box at the top of the JBrowse vi
    7 KB (1,179 words) - 19:04, 20 December 2022
  • FlyBase:Insertion Report
    |'''Symbol''' || style="width: 80%;" | The valid symbol that is used in FlyBase for the insertion. If the insertion results in a described allele, the alle ...he species prefix is displayed wherever the gene symbol is used throughout FlyBase. For D.melanogaster genes, the species prefix is only displayed in the '''G
    16 KB (2,349 words) - 17:46, 20 December 2022
  • FlyBase:Maps
    ...ies|Antibodies]]</big>||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Neuroscience|Neuroscience]]</big> ...ical Advances]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:GSEA|Gene Set<br/> Enrichment Tools]]</big>
    28 KB (4,378 words) - 21:20, 11 October 2023
  • FlyBase:ScRNA-Seq
    ...ies|Antibodies]]</big>||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Neuroscience|Neuroscience]]</big> ...ical Advances]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:GSEA|Gene Set<br/> Enrichment Tools]]</big>
    11 KB (1,507 words) - 21:18, 11 October 2023
  • FlyBase:Introduction to Drosophila Research
    FlyBase is a database of genetic and molecular data for D. melanogaster and other D
    1 KB (191 words) - 16:16, 12 June 2014
  • FlyBase:Dataset-Collection Report
    ...These are represented as distinct but related components, each a distinct FlyBase entity with its own tailored report: the "biosample" (biological source mat |'''Name''' || all || The name that FlyBase uses for this dataset.
    16 KB (2,256 words) - 17:47, 20 December 2017
  • FlyBase:Pathway Report
    The <b>‘Gene Group - Pathway Report’</b> is a sub-category of our [[FlyBase:Gene_Group_Report|Gene Group]] resource, which houses functional collection All Pathways Reports in FlyBase are compiled manually by FlyBase curators, based on research literature, using standards for inclusion agree
    17 KB (2,654 words) - 16:10, 8 January 2023
  • FlyBase:Gene Ontology (GO) Annotation
    ...lthough GO terms are intended to describe the properties of gene products, FlyBase currently assigns GO terms to genes rather than protein or RNA. FlyBase is one of the founding members of the [http://geneontology.org/ Gene Ontolo
    17 KB (2,595 words) - 15:52, 28 September 2023
  • FlyBase:Feature Mapper
    ...dinates, and the feature symbol. Where applicable, the symbol links to the FlyBase report page for that feature. Search results can be saved as a GFF file or '''Step 1.''' Enter one or more IDs, symbols, or annotation IDs for FlyBase features (genes, insertions, transcripts, etc.) that have associated sequen
    3 KB (491 words) - 06:42, 10 October 2019
  • FlyBase:Allele Report
    ...have been introduced into Drosophila via transgenic constructs. See the [[FlyBase:Nontraditional_alleles|Nontraditional alleles]] documentation for a detaile ...o the right of the data. The exception in the '''Allele Report''' is the [[FlyBase:Allele Report#General Information|General Information]] section which conta
    42 KB (6,591 words) - 12:31, 10 November 2023
  • FlyBase:ModENCODE RNA-Seq Overview
    https://wiki.flybase.org/wiki/FlyBase:ModENCODE_data_at_FlyBase ...additional query/analysis tools, as well as data displays on gene reports. FlyBase dataset reports provide descriptions of how data was generated and analyzed
    11 KB (1,678 words) - 18:20, 25 May 2023
  • FlyBase:Nontraditional alleles
    ...amed by researchers, and have been named by FlyBase, their presentation in FlyBase requires some explanation: ...rsome (this may not be strictly true for such alleles curated early in the FlyBase project).
    8 KB (1,454 words) - 06:54, 21 September 2015
  • FlyBase:RNA-Seq Overview
    The primary RNA-Seq data in FlyBase are the modENCODE data originally published in [http://{{flybaseorg}}/repor ...s, or cell lines. By default, the many tracks are displayed in the layered FlyBase “TopoView” format, and data are shown on a log2 scale, since they range
    8 KB (1,281 words) - 17:37, 20 December 2022
  • FlyBase:Curation of Genetic Data
    ...amed by researchers, and have been named by FlyBase, their presentation in FlyBase requires some explanation: ...rsome (this may not be strictly true for such alleles curated early in the FlyBase project).
    8 KB (1,402 words) - 19:04, 22 May 2013
  • FlyBase:Funding
    [[Category:FlyBase]]
    2 KB (225 words) - 14:46, 16 June 2014
  • FlyBase:Computed Feature type of genes
    The single term in this field is computed by FlyBase from the full list of SO terms listed in the SEQUENCE ONTOLOGY: Class of ge
    2 KB (278 words) - 06:52, 21 September 2015
  • FlyBase:GBrowse Help
    ...sers of an [http://flybase.org/downloads/archivedata archived] instance of FlyBase earlier than FB2022_05. ...release at [http://flybase.org/ flybase.org], please see our page about [[FlyBase:JBrowse]], the genome viewer that replaced GBrowse.
    18 KB (2,893 words) - 17:46, 14 December 2022
  • FlyBase:Drosophila Material Resources
    * Please see our dedicated [[FlyBase:Stocks|Stocks]] resource page. * Please see our dedicated [[FlyBase:CRISPR|CRISPR]] resource page.
    11 KB (1,583 words) - 21:31, 22 February 2024
  • FlyBase:QueryBuilder Help
    ...re sophisticated searches relative to QuickSearch or other search tools on FlyBase. Using QB, you can search any field in a FlyBase report using a QuerySegment, and then combine the resulting hit-list with s
    13 KB (2,107 words) - 22:40, 23 January 2018
  • FlyBase:QuickSearch
    The QuickSearch tool on the FlyBase home page allows searching across all FlyBase reports. Forms for searching specific types of data have been separated int *[[FlyBase:QuickSearch#Search FlyBase tab| Search FlyBase tab]]
    38 KB (5,990 words) - 13:51, 15 June 2023
  • Resource Portal
    FlyBase maintains extensive lists of useful external Network and Material Resources '''[http://flybase.org/wiki/FlyBase:Drosophila_Network_Resources Network Resources]'''<br/>
    32 KB (4,169 words) - 20:17, 9 December 2015
  • FlyBase:CRISPR
    ...ies|Antibodies]]</big>||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Neuroscience|Neuroscience]]</big> ...ical Advances]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:GSEA|Gene Set<br/> Enrichment Tools]]</big>
    18 KB (2,436 words) - 15:32, 27 March 2024
  • FlyBase:Tools Overview
    ...ion bar. In addition to the Navigation bar, which can be accessed from any FlyBase page, the homepage also has direct links to the most commonly used tools. *[[FlyBase:Tools Overview#Overview of Search Strategies|Overview of Search Strategies]
    37 KB (5,962 words) - 20:01, 29 March 2023
  • FlyBase:FAQ
    ! style="text-align: left; background: #C8C8CD" | <big>FlyBase FAQ</big> ...he data sets available are described on the [https://wiki.flybase.org/wiki/FlyBase:Downloads_Overview Downloads Overview page].
    67 KB (10,581 words) - 19:22, 7 May 2024
  • FlyBase:Fly Board
    ...ductive relationships between the research community and resources such as FlyBase, Drosophila stock centers, groups maintaining and distributing other Drosop ...email list please sign up for the [http://flybase.org/community/newsletter FlyBase newsletter].
    25 KB (3,560 words) - 15:05, 19 April 2024
  • FlyBase:Interaction Browser
    The tool accepts a FlyBase gene or allele ID, and valid gene symbols (e.g. "fz") or allele symbols (e.
    3 KB (593 words) - 19:27, 2 January 2018
  • FlyBase:Gene Model Annotation Guidelines
    ..., Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM, and the FlyBase Consortium. (2015) Gene Model Annotations for ''Drosophila melanogaster'': ..., Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM., and the FlyBase Consortium. (2015) Gene Model Annotations for ''Drosophila melanogaster'':
    39 KB (5,700 words) - 20:13, 29 March 2023
  • FlyBase:JBrowse Tracks
    ...ide View''' When zoomed in, the DNA sequence of the Release 6 (R6) [http://flybase.org/reports/FBrf0227719.html (Hoskins et al, 2015)] genome is shown as colo ...dow containing an automated gene summary when moused over and links to the FlyBase Gene Report when clicked.
    61 KB (8,553 words) - 09:36, 22 February 2024
  • FlyBase:Downloads Overview
    ...ta files available at the [ftp://ftp.flybase.net/releases/current/ current FlyBase FTP repository]. Files can be downloaded directly through the web interface .../ past releases]. It's also possible to browse the FTP file by [http://ftp.flybase.net/genomes genomes].</br>
    85 KB (12,797 words) - 09:23, 1 May 2024
  • FlyBase:Overview
    ...ta and resources at external databases are also incorporated. As a result, FlyBase serves as a nexus for all Drosophila-related information. ...and guide for our diverse user base. Please refer to documentation on the FlyBase website and in cited publications for more details.
    54 KB (8,096 words) - 21:41, 20 December 2022
  • FlyBase:Gene Report
    ...ly via its mutant phenotype. Both types of locus are given gene reports in FlyBase. ...ne reports for genes derived from species within the family Drosophilidae, FlyBase also includes gene reports for non-drosophilid genes ("foreign genes") that
    78 KB (11,675 words) - 12:18, 17 January 2024
  • FlyBase:GBrowse Tracks
    ...sers of an [http://flybase.org/downloads/archivedata archived] instance of FlyBase earlier than FB2022_05. ...release at [http://flybase.org/ flybase.org], please see our page about [[FlyBase:JBrowse]], the genome viewer that replaced GBrowse.
    44 KB (6,407 words) - 17:45, 14 December 2022
  • FlyBase:GSEA
    ...tools with links and information. A list of more GSEA tools can be found [[FlyBase:Drosophila_Online_Resources#Gene_Set_Enrichment_Analysis|<b>here</b>]].
    7 KB (974 words) - 09:48, 22 September 2023
  • FlyBase:About
    ==FlyBase Consortium== The FlyBase project is carried out by a consortium of Drosophila researchers and comput
    52 KB (6,710 words) - 19:45, 14 May 2024
  • FlyBase:Nomenclature
    ...red here. Please [http://{{flybaseorg}}/cgi-bin/mailto-fbhelp.html contact FlyBase] to discuss such cases or any other aspect of the nomenclature. ==Policy for establishing FlyBase-approved gene symbols and names ==
    90 KB (13,861 words) - 06:53, 8 June 2021
  • FlyBase:Drosophila Online Resources
    ...y sequenced Drosophila species:<br />[http://flybase.org/wiki/FlyBase:Maps FlyBase Maps] * <b>List of Drosophila reference genome assemblies</b> at FlyBase, NCBI and UCSC. [[File:DrosophilaGenomeAssemblies.xls]] (spreadsheet) ''Upd
    65 KB (9,462 words) - 13:33, 19 March 2024
  • FlyBase:List of Contributors
    '''It is people like you that help sustain FlyBase by paying the website access fee and contributing !!<br /> PLEASE [mailto:FlyBase-fees@morgan.harvard.edu?subject=contributor%20edits LET US KNOW] IF YOUR NA
    5 KB (696 words) - 19:04, 24 March 2021
  • FlyBase:Gene Snapshot Contributors
    ...l to the following people for contributing their expert knowledge toward [[FlyBase:Gene Snapshots| Gene Snapshots]]. We are still in the process of entering g
    20 KB (3,800 words) - 16:45, 3 April 2024
  • FlyBase:ModENCODE data at FlyBase
    .../analysis tools, as well download files and data displays on gene reports. FlyBase dataset reports provide descriptions of how data was generated and analyzed '''Please note''': While FlyBase hosts a selection of tools for browsing and using modENCODE data, it is ''n
    338 KB (49,999 words) - 18:19, 25 May 2023
  • FlyBase:Papers with technical advances
    ...ies|Antibodies]]</big>||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Neuroscience|Neuroscience]]</big> ...ical Advances]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:GSEA|Gene Set<br/> Enrichment Tools]]</big>
    193 KB (25,070 words) - 10:00, 2 May 2024

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