Difference between revisions of "FlyBase:Help"

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====Tools====
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__TOC__
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=FlyBase Help=
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==[[FlyBase:FlyBase Help Index | FlyBase Help Index]]==
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==Tools==
 
* [[FlyBase:Tools Overview|Tools Overview]]
 
* [[FlyBase:Tools Overview|Tools Overview]]
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* [[FlyBase:JBrowse|FlyBase JBrowse Help]]
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* [[FlyBase:JBrowse Tracks|JBrowse Tracks]]
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* [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]]
  
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====FIles====
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==Downloads==
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*[http://flybase.org/static_pages/docs/datafiles.html Files Overview]
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* [[FlyBase:Downloads Overview|Downloads Overview]]
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=bulkdata7.html&title=Current%20Release Precomputed data files for the current release]
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=archivedata3.html&title=Archived%20Releases Archived data files for recent releases]
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* [[Media:DmelMapTable.160615c.xlsx | Map conversion]]
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:'''FTP site'''
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::*[ftp://ftp.flybase.org/releases/ Index of releases]
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::*[ftp://ftp.flybase.org/genomes/ Index of Genomes]
  
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====Species====
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==External Resource Links==
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*[http://flybase.org/static_pages/docs/abbreviations.html Abbreviations]
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* [[FlyBase:External Resources|All External Resources]]
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====Documents====
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** [[FlyBase:Drosophila Network Resources| Curated list of Drosophila Online Resources]]
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*[[FlyBase:About|About FlyBase]]
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** [[FlyBase:Drosophila Material Resources|Curated list of Drosophila Material Resources (Reagents)]]
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*[[FlyBase:RefMan G.|FlyBase Curation Documentation (RefMan G)]]
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** [[FlyBase:CRISPR|CRISPR links page]]
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**[[FlyBase:Nontraditional alleles |G.1. Nontraditional alleles]]
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** [[FlyBase:ScRNA-Seq|ScRNA-Seq links page]]
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**[[FlyBase:Controlled vocabularies used by FlyBase |G.2. Controlled Vocabularies used by FlyBase]]
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** [[FlyBase:RNAi|RNAi links page]]
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**[[FlyBase:Gene Ontology (GO) Annotation |G.3. Classification of Gene Products using Gene Ontology (GO) terms]]
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** [[FlyBase:Stocks|Stocks links page]]
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**[[FlyBase:Computed Feature type of genes | G.4. Computed Feature type of genes]]
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** [[FlyBase:Antibodies|Antibodies links page]]
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**[[FlyBase:Computed cytological data |G.5. Computed cytological data]]
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** [[FlyBase:Neuroscience|Neuroscience links page]]
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**[[FlyBase:Personal communications to FlyBase |G.6. Personal communications to FlyBase]]
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** [[FlyBase:Model Organism Databases|Model Organism Databases links page]]
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**[[FlyBase:Gene_Model_Annotation_Guidelines#G.7._Gene_Model_Annotation_Guidelines_.282007.29|G.7. Gene Model Annotation Guidelines (2007)]]
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** [[FlyBase:Images|Images links page]]
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**[[FlyBase:Gene Model Annotation Guidelines|G.8. Gene Model Annotation Guidelines (2012)]]
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** [[FlyBase:Maps|Maps links page]]
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**[[FlyBase:Annotation Evidence Score|G.9. What does the annotation evidence score mean?]]
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** [http://www.flyrnai.org/tools/protocols/web/| DRSC Protocols page]
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** [[FlyBase:Papers with technical advances|Papers with technical advances links page]]
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** [[FlyBase:GSEA|Gene Set Enrichment Tools links page]]
  
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*[[FlyBase:RefMan F.|Links to and from FlyBase (RefMan F)]]
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==Community==
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**[[FlyBase:Identifiers|FlyBase IDs]]
 
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**[[FlyBase:Links to and from FlyBase (RefMan F)|Links to and from FlyBase (RefMan F)]]
 
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*[[FlyBase:Nomenclature|Nomenclature]]
 
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*[http://flybase.org/static_pages/docs/release_notes.html Release Notes]
 
  
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====Resources====
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* [http://flybase.org/submission/publication/ Fast Track Your Paper]
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* [[FlyBase:All Resources|All Resources]]
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* [[FlyBase:Fly Lab List| Fly Lab List]]
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** [[FlyBase:Drosophila Network Resources|Drosophila Network Resources]]
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* [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]]
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** [[FlyBase:Drosophila Material Resources|Drosophila Material Resouces (Reagents)]]
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* [https://groups.google.com/forum/#!forum/flybase FlyBase Forum]
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* [[FlyBase:Model Organism Databases|Model Organism Databases]]
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* [https://flybase.org/community/newsletter FlyBase Newsletter]
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* [[FlyBase:Stock Collections|Stock Collections]]
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* [http://www.bio.net/hypermail/dros/ bionet.dros]
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* [http://flybase.org/static_pages/lists/vectors.html Vectors and Constructs]
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* [[FlyBase:Fly Board| Fly Board]]
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*Other Links:
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* [[FlyBase:NIH Funding| NIH Funding]]
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**[http://www.fruitfly.org/ BDGP]
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* [https://flyslackco.slack.com/ FlySlack]
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**[https://dgrc.cgb.indiana.edu/Home DGRC]
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* [[FlyBase:Gene_Snapshots| Gene Snapshots]]
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**[http://www.ou.edu/journals/dis/byissue.html DIS by Issue]
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* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)]
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**[http://www.flyexpress.net/ FlyExpress]
 
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**[http://www.sdbonline.org/sites/fly/aimain/1aahome.htm Interactive Fly]
 
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**[http://www.modencode.org/ modENCODE]
 
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**[http://www.textpresso.org/fly/ Textpresso for Fly]
 
  
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====News====
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==Species==
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*[[FlyBase:FlyBase News|FlyBase News]]
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* [[FlyBase:Phylogeny|Phylogeny]]
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*[http://flybase.org/forums/ FlyBase Forum]
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* [http://flybase.org/static/sequenced_species Original 12 Sequenced Drosophila Species]
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*[[FlyBase:FlyBase Positions|FlyBase Positions]]
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* [http://flybase.org/maps/synteny Synteny Table for Original 12 Sequenced Drosophila Species]
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*[[FlyBase:Meetings|Meetings]]
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* [http://flybase.org/static/Drosophilidae Color Illustrations of more than 100 Drosophila Species]
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*[[FlyBase:Courses|Courses]]
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* [[FlyBase:Abbreviations|Abbreviations]]
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*[[FlyBase:Funding|Funding]]
 
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*[http://www.bio.net/hypermail/dros/ bionet.dros]
 
  
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====Help====
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==About FlyBase==
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*[http://flybase.org/static_pages/search/site_search.html Google<sup>TM</sup> FlyBase]
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=release_notes.html&title=Release%20Notes Release Notes]
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*[http://flybase.org/static_pages/docs/Site_Map2.html Site Map]
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* [http://flybase.org/static/new-this-release New in Release]
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*[[FlyBase:FAQ|FAQ]]
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* [http://flybase.org/static/release_schedule Release Schedule]
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*[[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase Guides: Pamphlets and Powerpoints]]
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* [[FlyBase:FlyBase Positions| FlyBase Positions]]
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*[https://www.youtube.com/user/FlyBaseDB Video Tutorials]
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* [[FlyBase:About#Citing_FlyBase| Citing FlyBase]]
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*[http://flybase.org/static_pages/newhelp/report_help.html Report Help]
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* [[FlyBase:About#FlyBase_Consortium| FlyBase Consortium]]
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*[[FlyBase:New to Flies?|New to Flies?]]
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* [[FlyBase:Overview| FlyBase Overview]]
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*[[FlyBase:Personal communications to FlyBase |Personal communications to FlyBase]]
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* [[FlyBase:About#FlyBase_Publications| FlyBase Publications]]
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*[[FlyBase:Author Guidelines|Author Guidelines]]
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* [[FlyBase:About#FlyBase_Support| FlyBase Support]]
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*[http://flybase.org/cgi-bin/mailto-fbhelp.html Contact FlyBase]
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* [[FlyBase:FlyBase Website Access Fee FAQ| FlyBase Website Access Fee FAQ]]
  
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====General====
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==Help==
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*[[FlyBase:Zotero support in FlyBase|Zotero support in FlyBase]]
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* [[FlyBase:New to Flies?|Useful links if you are new to Flies]]
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*[[FlyBase:Fly Board|Fly Board and White Papers]]
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* [https://wiki.flybase.org/wiki/FlyBase:Tweetorial FlyBase Tweetorials]
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* [https://www.youtube.com/channel/UCG-KSNq46vkezAwbrVQojYA/videos FlyBase Video Tutorials]
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* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
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* [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]]
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* [[FlyBase:Author Guidelines|Author Guidelines]]
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* [[FlyBase:Personal communications to FlyBase|Personal communications to FlyBase]]
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* [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase pamphlets, powerpoints and posters]]
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* [https://flybase.org/contact/email Contact FlyBase]
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* [[FlyBase:Vectors and Constructs|Commonly used vectors and constructs]]
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* [[FlyBase:FAQ|FAQs]]
  
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==FlyBase Report Help==
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'''FlyBase Report Help and Documentation'''
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* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
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==Documentation==
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'''Nomenclature'''
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*[[FlyBase:Nomenclature|Nomenclature Guidelines]]
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*[[FlyBase:Nontraditional alleles |Nontraditional alleles]]
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'''Gene Model Annotation'''
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*[[FlyBase:Gene Model Annotation Guidelines|Gene Model Annotation Guidelines (2012)]]
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*[[FlyBase:Gene_Model_Annotation_Guidelines#G.7._Gene_Model_Annotation_Guidelines_.282007.29|Gene Model Annotation Guidelines (2007)]]
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*[[FlyBase:Annotation Evidence Score|What does the annotation evidence score mean?]]
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'''GO Annotation'''
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*[[FlyBase:Gene Ontology (GO) Annotation |Classification of Gene Products using Gene Ontology (GO) terms]]
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'''Computed Fields'''
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*[[FlyBase:Computed Feature type of genes | Computed Feature type of genes]]
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*[[FlyBase:Computed cytological data | Computed cytological data]]
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'''Links to and from FlyBase'''
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*[[FlyBase:RefMan F.|Instructions for creating links to and from FlyBase]]
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==General==
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* [[FlyBase:Fly Board|Fly Board and White Papers]]
  
 
[[Category:Help]]
 
[[Category:Help]]
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==Tools for Archived Instances of FlyBase==
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{| class="wikitable" style="text-align: center; color: red; margin: auto;"
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!colspan="1"|Warning
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|-
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|rowspan="1"|Information about GBrowse is only relevant to users of an [http://flybase.org/downloads/archivedata archived] instance of FlyBase earlier than FB2022_05.
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For users working with the current release at [http://flybase.org/ flybase.org], please see our page about [[FlyBase:JBrowse]], the genome viewer that replaced GBrowse.
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|}
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* [[FlyBase:GBrowse|FlyBase GBrowse Help]]
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* [[FlyBase:GBrowse Tracks|GBrowse Tracks]]

Latest revision as of 21:15, 11 October 2023


FlyBase Help

FlyBase Help Index

Tools

Downloads

FTP site

External Resource Links

Community

Species

About FlyBase

Help

FlyBase Report Help

FlyBase Report Help and Documentation

Documentation

Nomenclature

Gene Model Annotation

GO Annotation

Computed Fields

Links to and from FlyBase

General


Tools for Archived Instances of FlyBase

Warning
Information about GBrowse is only relevant to users of an archived instance of FlyBase earlier than FB2022_05.

For users working with the current release at flybase.org, please see our page about FlyBase:JBrowse, the genome viewer that replaced GBrowse.

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