Difference between revisions of "FlyBase:Help"
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− | ==== | + | __TOC__ |
+ | |||
+ | |||
+ | =FlyBase Help= | ||
+ | |||
+ | ==[[FlyBase:FlyBase Help Index | FlyBase Help Index]]== | ||
+ | |||
+ | ==Tools== | ||
* [[FlyBase:Tools Overview|Tools Overview]] | * [[FlyBase:Tools Overview|Tools Overview]] | ||
* [[FlyBase:GBrowse|FlyBase GBrowse Help]] | * [[FlyBase:GBrowse|FlyBase GBrowse Help]] | ||
* [[FlyBase:GBrowse Tracks|GBrowse Tracks]] | * [[FlyBase:GBrowse Tracks|GBrowse Tracks]] | ||
+ | * [[FlyBase:JBrowse|FlyBase JBrowse Help]] | ||
+ | * [[FlyBase:JBrowse Tracks|JBrowse Tracks]] | ||
+ | * [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]] | ||
− | + | ==Downloads== | |
* [[FlyBase:Downloads Overview|Downloads Overview]] | * [[FlyBase:Downloads Overview|Downloads Overview]] | ||
− | * [http:// | + | * [http://flybase.org/cgi-bin/get_static_page.pl?file=bulkdata7.html&title=Current%20Release Precomputed data files for the current release] |
− | * [http:// | + | * [http://flybase.org/cgi-bin/get_static_page.pl?file=archivedata3.html&title=Archived%20Releases Archived data files for recent releases] |
− | * [ | + | * [[Media:DmelMapTable.160615c.xlsx | Map conversion]] |
:'''FTP site''' | :'''FTP site''' | ||
− | ::*[ftp://ftp.flybase. | + | ::*[ftp://ftp.flybase.org/releases/ Index of releases] |
− | ::*[ftp://ftp.flybase. | + | ::*[ftp://ftp.flybase.org/genomes/ Index of Genomes] |
− | + | ==Links== | |
− | * [[FlyBase: | + | * [[FlyBase:External Resources|All External Resources]] |
** [[FlyBase:Drosophila Network Resources|Drosophila Network Resources]] | ** [[FlyBase:Drosophila Network Resources|Drosophila Network Resources]] | ||
− | ** [[FlyBase:Drosophila Material Resources|Drosophila Material | + | ** [[FlyBase:Drosophila Material Resources|Drosophila Material Resources (Reagents)]] |
− | * [[FlyBase:Model Organism Databases|Model Organism Databases]] | + | ** [[FlyBase:CRISPR|CRISPR links page]] |
− | * [[FlyBase: | + | ** [[FlyBase:Stocks|Stocks links page]] |
+ | ** [[FlyBase:RNAi|RNAi links page]] | ||
+ | ** [[FlyBase:Model Organism Databases|Model Organism Databases links page]] | ||
+ | ** [[FlyBase:Neuroscience|Neuroscience links page]] | ||
+ | ** [[FlyBase:Antibodies|Antibodies links page]] | ||
+ | ** [[FlyBase:Images|Images links page]] | ||
+ | ** [[FlyBase:Maps|Maps links page]] | ||
+ | ** [http://www.flyrnai.org/tools/protocols/web/| DRSC Protocols page] | ||
*[[FlyBase:Funding|Funding]] | *[[FlyBase:Funding|Funding]] | ||
+ | *[http://www.alliancegenome.org Alliance of Genome Resources] | ||
*[http://www.fruitfly.org/ BDGP] | *[http://www.fruitfly.org/ BDGP] | ||
*[https://dgrc.cgb.indiana.edu/Home DGRC] | *[https://dgrc.cgb.indiana.edu/Home DGRC] | ||
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*[http://www.textpresso.org/fly/ Textpresso for Fly] | *[http://www.textpresso.org/fly/ Textpresso for Fly] | ||
− | + | ==Community== | |
− | * [http:// | + | * [http://flybase.org/submission/publication/ Fast Track Your Paper] |
* [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]] | * [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]] | ||
* [https://groups.google.com/forum/#!forum/flybase FlyBase Forum] | * [https://groups.google.com/forum/#!forum/flybase FlyBase Forum] | ||
− | * [http:// | + | * [http://flybase.org/static_pages/people/people_query6.html Find A Person] |
− | * [http:// | + | * [http://flybase.org/static_pages/news/newsletter.html FlyBase Newsletter] |
* [http://www.bio.net/hypermail/dros/ bionet.dros] | * [http://www.bio.net/hypermail/dros/ bionet.dros] | ||
− | * [http:// | + | * [http://flybase.org/wiki/Category:Genes FlyGene Wiki] |
+ | * [[FlyBase:Gene_Snapshots| Gene Snapshots]] | ||
* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)] | * [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)] | ||
+ | * [[FlyBase:Fly Board| Fly Board]] | ||
− | + | ==Species== | |
* [[FlyBase:Phylogeny|Phylogeny]] | * [[FlyBase:Phylogeny|Phylogeny]] | ||
− | * [http:// | + | * [http://flybase.org/static/sequenced_species Original 12 Sequenced Drosophila Species] |
− | * [http:// | + | * [http://flybase.org/maps/synteny Synteny Table for Original 12 Sequenced Drosophila Species] |
− | * [http:// | + | * [http://flybase.org/static/Drosophilidae Color Illustrations of more than 100 Drosophila Species] |
* [[FlyBase:Abbreviations|Abbreviations]] | * [[FlyBase:Abbreviations|Abbreviations]] | ||
− | + | ==About FlyBase== | |
− | + | * [http://flybase.org/cgi-bin/get_static_page.pl?file=release_notes.html&title=Release%20Notes Release Notes] | |
− | * [http:// | + | * [http://flybase.org/static/new-this-release New in Release] |
− | * [http:// | + | * [http://flybase.org/static/release_schedule Release Schedule] |
− | * [http:// | ||
* [[FlyBase:FlyBase Positions| FlyBase Positions]] | * [[FlyBase:FlyBase Positions| FlyBase Positions]] | ||
* [[FlyBase:About#Citing_FlyBase| Citing FlyBase]] | * [[FlyBase:About#Citing_FlyBase| Citing FlyBase]] | ||
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* [[FlyBase:About#FlyBase_Publications| FlyBase Publications]] | * [[FlyBase:About#FlyBase_Publications| FlyBase Publications]] | ||
* [[FlyBase:About#FlyBase_Support| FlyBase Support]] | * [[FlyBase:About#FlyBase_Support| FlyBase Support]] | ||
+ | * [[FlyBase:FlyBase Website Access Fee FAQ| FlyBase Website Access Fee FAQ]] | ||
− | + | ==Help== | |
− | + | * [https://www.youtube.com/channel/UCG-KSNq46vkezAwbrVQojYA/videos FlyBase Video Tutorials] | |
− | + | * [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]] | |
− | |||
− | * [https://www.youtube.com/ | ||
− | * [[FlyBase:Report Help|FlyBase | ||
* [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]] | * [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]] | ||
* [[FlyBase:Author Guidelines|Author Guidelines]] | * [[FlyBase:Author Guidelines|Author Guidelines]] | ||
* [[FlyBase:Personal communications to FlyBase|Personal communications to FlyBase]] | * [[FlyBase:Personal communications to FlyBase|Personal communications to FlyBase]] | ||
− | * [ | + | * [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase pamphlets, powerpoints and posters]] |
− | * [[FlyBase:New to Flies?| | + | * [[FlyBase:New to Flies?|Useful links if you are new to Flies]] |
− | * [http:// | + | * [http://contact/email Contact FlyBase] |
− | * [[FlyBase:Vectors and Constructs|Commonly | + | * [[FlyBase:Vectors and Constructs|Commonly used vectors and constructs]] |
+ | * [[FlyBase:FAQ|FAQs]] | ||
− | == | + | ==FlyBase Report Help== |
− | + | '''FlyBase Report Help and Documentation''' | |
− | + | * [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]] | |
− | + | ==Documentation== | |
− | + | '''Nomenclature''' | |
− | |||
− | :: | + | *[[FlyBase:Nomenclature|Nomenclature Guidelines]] |
+ | *[[FlyBase:Nontraditional alleles |Nontraditional alleles]] | ||
− | + | '''Gene Model Annotation''' | |
− | |||
− | |||
− | :: | + | *[[FlyBase:Gene Model Annotation Guidelines|Gene Model Annotation Guidelines (2012)]] |
+ | *[[FlyBase:Gene_Model_Annotation_Guidelines#G.7._Gene_Model_Annotation_Guidelines_.282007.29|Gene Model Annotation Guidelines (2007)]] | ||
+ | *[[FlyBase:Annotation Evidence Score|What does the annotation evidence score mean?]] | ||
− | + | '''GO Annotation''' | |
− | : | + | *[[FlyBase:Gene Ontology (GO) Annotation |Classification of Gene Products using Gene Ontology (GO) terms]] |
− | + | '''Computed Fields''' | |
− | |||
− | :: | + | *[[FlyBase:Computed Feature type of genes | Computed Feature type of genes]] |
+ | *[[FlyBase:Computed cytological data | Computed cytological data]] | ||
− | + | '''Links to and from FlyBase''' | |
− | + | *[[FlyBase:RefMan F.|Instructions for creating links to and from FlyBase]] | |
− | + | ==General== | |
− | |||
− | |||
− | |||
− | |||
− | |||
* [[FlyBase:Fly Board|Fly Board and White Papers]] | * [[FlyBase:Fly Board|Fly Board and White Papers]] | ||
− | |||
[[Category:Help]] | [[Category:Help]] |
Revision as of 16:49, 16 May 2018
FlyBase Help
FlyBase Help Index
Tools
- Tools Overview
- FlyBase GBrowse Help
- GBrowse Tracks
- FlyBase JBrowse Help
- JBrowse Tracks
- Feature differences between JBrowse and GBrowse on FlyBase
Downloads
- Downloads Overview
- Precomputed data files for the current release
- Archived data files for recent releases
- Map conversion
- FTP site
Links
- All External Resources
- Funding
- Alliance of Genome Resources
- BDGP
- DGRC
- DIS by Issue
- FlyExpress
- Interactive Fly
- modENCODE
- Textpresso for Fly
Community
- Fast Track Your Paper
- FlyBase Community Advisory Group
- FlyBase Forum
- Find A Person
- FlyBase Newsletter
- bionet.dros
- FlyGene Wiki
- Gene Snapshots
- Twitter (@FlyBaseDotOrg)
- Fly Board
Species
- Phylogeny
- Original 12 Sequenced Drosophila Species
- Synteny Table for Original 12 Sequenced Drosophila Species
- Color Illustrations of more than 100 Drosophila Species
- Abbreviations
About FlyBase
- Release Notes
- New in Release
- Release Schedule
- FlyBase Positions
- Citing FlyBase
- FlyBase Consortium
- FlyBase Publications
- FlyBase Support
- FlyBase Website Access Fee FAQ
Help
- FlyBase Video Tutorials
- Field-by-field guides to FlyBase reports
- Controlled vocabularies used by FlyBase
- Author Guidelines
- Personal communications to FlyBase
- FlyBase pamphlets, powerpoints and posters
- Useful links if you are new to Flies
- Contact FlyBase
- Commonly used vectors and constructs
- FAQs
FlyBase Report Help
FlyBase Report Help and Documentation
Documentation
Nomenclature
Gene Model Annotation
- Gene Model Annotation Guidelines (2012)
- Gene Model Annotation Guidelines (2007)
- What does the annotation evidence score mean?
GO Annotation
Computed Fields
Links to and from FlyBase