Search results

...''' provides information on clones. The report includes information on the type of clone, the sequence of the clone insert (if available), the library that ...key type of the clone. Currently there are reports available for clones of type 'cDNA_clone' and 'genomic_clone'.

...ear, title, journal abbreviation, volume, issue number, page range/article number/URL. |'''Publication Type''' || Term from the the [http://{{flybaseorg}}/cgi-bin/cvreport.pl?id=FBcv

This tool will accept a list of FlyBase symbols/IDs (for any data type) and, where necessary/possible, update them to their current versions. It w 1. Either type/paste in a set of IDs/symbols into the 'Enter IDs or Symbols' box, or choos

If an individual genotype variant chromosome has been reported to be usable as a balancer this is indicated by the presence |'''FlyBase ID''' || The '''Primary''' FlyBase identifier number of the balancer/genotype variant, used to uniquely identify the balancer/ge

...ase ID''' || The unique identifier for the FlyBase experimental tool (FBto number). ...struct are listed in separate columns, in addition to a column listing the number of stocks.

...lasses may be mapped to a single site on the sequenced genome. The feature type transposable_element is used for the third class, natural transposons in th |'''FlyBase ID''' || The '''Primary''' FlyBase identifier number of the insertion, used to uniquely identify the insertion in the database.

...erent sections. The field-by-field documentation here indicates the report type to which the field applies. ...of dataset or reagent collection: e.g., in a reagent report, the "Reagent type' might be indicated as "cDNA library".

...transgenic transposons, cloning vectors, and cell culture vectors. A small number of genomic clones are also described using this report, if they were used s ...A segments. For each individual DNA segment a Recombinant Construct Report has also been created, containing data specific to that segment.

...These references can be viewed as a hitlist by clicking on the number. The number of pathway references associated with a gene may also help researchers weig ...ubmed/18567805 PMID:18567805]) is often used in cell culture. Each pathway has very different readout assays (i.e. specific phenotypes, gene expression, p

| '''Species''' || The species for which the Gene Group has been compiled. | '''FlyBase ID''' || The unique identifier for the FlyBase Gene Group (FBgg number).

...or || style="width: 80%;" | Indicates whether whole genome or specific arm has been sequenced. |Genome Accession || GenBank accession number and link.

|'''Feature type''' || The SO Ontology designation for the RNA type linked to the associated “CV Term Report”. |'''FlyBase ID''' || The FlyBase identifier number of the transcript, used to uniquely identify the transcript in the database

...ions. Aberrations are chromosomal rearrangements that differ from the wild-type arrangement of chromosomes. ...hat describe the nature of the chromosomal aberration relative to the wild-type chromosomal order.

...licking on "Search". The autocomplete feature, guided by the text that you type, provides help with finding valid CV terms. For each search performed, the ...a, pupal dorsal branch, protein pupylation, pharate adult stage P11, which has the synonym pupal stage P11), while searching with ‘*pup*’ finds any te

|'''Feature type''' || The type of feature described in the report. In this case, "allele". |'''FlyBase ID''' || The '''Primary''' FlyBase identifier number of the allele, used to uniquely identify the allele in the database.

.... Most of the data classes searchable under the [[FlyBase:QuickSearch#Data Type tab| Data Class tab]] have auto-completion associated with them as well. ...several search terms may be used simultaneously for a search. When a term has been entered in one of these fields, the coordinated auto-completion for th

:FB File: This is always the primary FlyBase identifier number for a Drosophila gene. :computer files has a unique 7 digit identifier (an FBrf). Where this

...t are also identified on the genome. The genome sequence gives a different number for that length, so we then apply a scaling factor, i.e. we calculate the c If the affected gene has a computed cytological location based on its sequence location (as describe

...Browse ([http://www.ncbi.nlm.nih.gov/pubmed/23376193 Stein 2013]). FlyBase has offered GBrowse2 since March 2013, primarily because of its ability to hand ...l option in the Data Source box is 'D. melanogaster MegaView'. This option has been optimised for viewing larger regions of the D.melanogaster genome. For

|'''FlyBase ID'''|| The Primary FlyBase identifier number of the human disease, used to uniquely identify the Human Disease Model in ...the nature of transgenically expressed constructs, whether the human gene has been used to heterologously rescue Drosophila loss-of-function phenotypes;

...constructed query templates. The available templates are organized by data type. To see the list of templates related to a given class of data, choose the ...in your search, click on the appropriate green button, which indicates the number of hits and takes you to the relevant report or a hitlist. To see results i

...rack Your Paper (FTYP) tool allows you to quickly indicate that your paper has no curatable data types or investigates no ''Drosophila melanogaster'' gene ...to Fast-Track our paper but when I go to the link it shows that the paper has been already curated. What should I do?

<li>Clustering of multiple reagents of one type recommended, but is not mandatory.</li> <h3>Column A: Reagent type (mandatory)</h3>

...ulary term from the Sequence Ontology (SO), which aims to describe the key type of the gene. See [[FlyBase:Computed_Feature_type_of_genes|Computed Feature type of genes]] for a detailed description of how the term is selected.

...models based on the new 2012 guidelines is a work in progress. The release number corresponding to the last time a gene model was reviewed is now noted in th ...diction or protein alignment data, but these have significantly dropped in number.

...gation bar, which can be accessed from any FlyBase page, the homepage also has direct links to the most commonly used tools. ...n a specific gene/protein/region across the different species, there are a number of ways to query the data. Our [http://{{flybaseorg}}/blast/ BLAST server]

...ry to obtain the latest file without having to specify the FlyBase release number. However, you will need to know the sub-directory in which the file resides ...ample to retrieve the 'fbgn_annotation_ID' file for the FB2018_06 release, type:

* '''cDNA library aliquots'''<br />Aliquots from a number of the BDGP cDNA libraries are available from the labs on this [https://www * '''ExpreS2ion Biotechnologies'''<br />ExpreS2ion Biotechnologies has developed an "improved drosophila S2 insect cell expression system" and are

Since its inception in 1992, FlyBase has provided an online repository of biological data about Drosophila species, ...nt resources of interest to Drosophila researchers. A new ‘Community’ menu has been added to group features that facilitate interactions between researche

...with an uppercase letter if they are FIRST named for an aspect of the wild-type molecular function or activity of the gene product, which includes genes na ...the full ''gene name'' and as such, should ordinarily consist of a minimal number of characters. The gene symbol and name should use comparable capitalizatio

...(Hoskins et al, 2015)], which does not change between major releases. The number after the decimal point refers to the version of the annotation set, which ...cgi-bin/cvreport.pl?rel=is_a&id=SO:1000008 SO:1000008] A single nucleotide has been changed into another nucleotide. Location of mutation is indicated wit

...n is unknown and the feature indicates a range within which the breakpoint has been mapped. ...k Center (BDSC) to provide maximal coverage of the genome with the minimal number of deficiencies. The BDSC Deficiency Kit includes deficiencies with molecul

...the papers listed below suggest that they include a technical advance, new type of reagent, or resource likely to be useful for other researchers. Author s ...ion of technical advance''!!''Title''!!''Journal''!!''PubMed ID''!! ''FBrf number''