FlyBase:FlyBase Help Index

Video Tutorials

• FlyBase Video Tutorials on YouTube organized into four playlists.

Basic navigation series

• How to find all data related to a gene
• How to generate an excel file of all alleles of a gene
• Finding related genes in FlyBase: Gene Groups
• Finding related genes/alleles in FlyBase: Vocabularies
• Finding related genes in FlyBase: The Gene Ontology
• Gene Snapshots in FlyBase
• Finding genes with similar phenotypes

Tools series

• RNA-Seq Part I: Using GBrowse
• RNA-Seq Part II: Using RNA-Seq Profile Search
• RNA Seq Part III: Searching for Similarly Expressed Genes
• Finding related genes/alleles in FlyBase: Vocabularies
• Using the Orthology search tool
• Finding related genes in FlyBase: The Gene Ontology
• Finding genes with similar phenotypes

RNA-Seq series

• RNA-Seq Part I: Using GBrowse
• RNA-Seq Part II: Using RNA-Seq Profile Search
• RNA Seq Part III: Searching for Similarly Expressed Genes

FlyBase Guidelines

• Author Guidelines
• How to cite FlyBase

Report Help

Field by Field guides to FlyBase Reports

• All Reports
• Aberration Report
• Allele Report
• Balancer/Genotype variant Report
• Cell Line Report
• Clone Report
• CV (Controlled Vocabulary) Term Report
• Dataset/Collection Report
• Experimental Tool Report
• Gene Report
• Gene Group Report
• Human Disease Model Report
• Image Report
• Insertion Report
• Interaction Report
• Natural Transposon Report
• Pathway Report
• Person Report
• Polypeptide Report
• Recombinant Construct Report
• Reference Report
• Sequence Feature Report
• Strain Report
• Stock Report
• Transcript Report

• Computed Cytological data

Curation Documentation

• Controlled Vocabularies used by FlyBase
• Gene Model Annotation Guidelines
• Gene Ontology (GO) Annotation
• Nontraditional alleles
• Comonly used Vectors and Constructs

Tools and Downloads Documentation

Tools Overview

• Tools Overview

Query Tools Help

• Jump to Gene
• QueryBuilder
• QuickSearch
• Vocabularies Tool

Genomic/Map Tools Help

• BLAST
• CytoSearch
• Feature Mapper
• FlyBase GBrowse Help
• GBrowse Tracks
• FlyBase JBrowse Help
• JBrowse Tracks
• Feature differences between JBrowse and GBrowse on FlyBase
• Complete list of GBrowse/JBrowse Data Track Differences

Retrieve/Convert Tools Help

• Batch Download
• Coordinate Converter
• ID Converter
• Sequence Downloader

RNA-Seq Tools Help

• RNA-Seq Overview
• RNA-Seq by Region
• RNA-Seq Profile
• RNA-Seq Similarity

Downloads

• Downloads Overview

Information for Authors

• Author Guidelines
• Citing FlyBase
• Fast Track Your Paper
• FlyBase Community
• Gene Snapshots
• Personal Communications to FlyBase

Other Help

• Useful links if you are new to Flies
• Nomenclature
• Links to and from FlyBase
• FlyBase Website Access Fee FAQ
• FlyBase Community Advisory Group
• FlyBase Guides: Pamphlets, Powerpoints, and Posters
• Fly Board
• Technical advances in papers