Difference between revisions of "FlyBase:Stocks"

From FlyBase Wiki
Jump to navigation Jump to search
m (Updating 2 GDP links)
 
(40 intermediate revisions by one other user not shown)
Line 7: Line 7:
 
{|class="wikitable"
 
{|class="wikitable"
 
|-
 
|-
−
|style="text-align: center; padding: 20px;"| <big>[[FlyBase:Model_Organism_Databases|Model Organism<br/> Databases]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Images|Images]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Maps|Maps]]</big> ||style="text-align: center; padding: 20px;"| <big>[http://www.flyrnai.org/tools/protocols/web/ Protocols]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Papers_with_technical_advances|Papers with<br/> Technical Advances]]</big>
+
|style="text-align: center; padding: 20px;"| <big>[[FlyBase:Model_Organism_Databases|Model Organism<br/> Databases]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Images|Images]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Maps|Maps]]</big> ||style="text-align: center; padding: 20px;"| <big>[http://www.flyrnai.org/tools/protocols/web/ Protocols]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Papers_with_technical_advances|Papers with<br/> Technical Advances]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:GSEA|Gene Set<br/> Enrichment Tools]]</big>
  
 
|}
 
|}
Line 32: Line 32:
 
| style="white-space: nowrap;"| [https://thfc.zzbd.org/en THFC, Tsinghua Fly Center]|| Resources and technical services in support of RNAi, CRISPR, and gene overexpression experiments || Tsinghua Fly Center (THFC)<br/> Tsinghua University <br/> Beijing, China
 
| style="white-space: nowrap;"| [https://thfc.zzbd.org/en THFC, Tsinghua Fly Center]|| Resources and technical services in support of RNAi, CRISPR, and gene overexpression experiments || Tsinghua Fly Center (THFC)<br/> Tsinghua University <br/> Beijing, China
 
|-
 
|-
−
|style="background: #efefef;"| [http://stockcenter.vdrc.at/control/main VDRC, Vienna Drosophila Resource Center] ||style="background: #efefef;"| Transgenic <em>Drosophila</em> RNAi libraries, a collection of enhancer-GAL4 driver lines, the Tagged FlyFos TransgeneOme (fTRG) library, the Heidelberg CFD CRISPR Library and other diverse collections including tagged constructs, mutant alleles and reporters. ||style="background: #efefef;"| Vienna Drosophila Resource Center (VDRC)<br/> Vienna Biocenter Core Facilities GmbH<br/> Vienna, Austria
+
|style="background: #efefef;"| [https://shop.vbc.ac.at/vdrc_store/ Vienna Drosophila Resource Center (VDRC)] ||style="background: #efefef;"| Transgenic <em>Drosophila</em> RNAi libraries, a collection of enhancer-GAL4 driver lines, the Tagged FlyFos TransgeneOme (fTRG) library, the Heidelberg CFD CRISPR Library and other diverse collections including tagged constructs, mutant alleles and reporters. ||style="background: #efefef;"| Vienna Drosophila Resource Center (VDRC)<br/> Vienna Biocenter Core Facilities GmbH<br/> Vienna, Austria
 
|-
 
|-
  
Line 46: Line 46:
 
!style="background: #efefef;"| Stock Category !!style="background: #efefef;"| Availability
 
!style="background: #efefef;"| Stock Category !!style="background: #efefef;"| Availability
 
|-
 
|-
−
|style="background: #efefef; white-space: nowrap;"| Human Disease Models ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/hd/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/disease_ontology.html Kyoto],  [https://stockcenter.vdrc.at/control/sublibrary_list_rnai VDRC]
+
|style="background: #efefef; white-space: nowrap;"| Human Disease Models ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/hd/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/disease_ontology.html Kyoto],  [https://shop.vbc.ac.at/vdrc_store/ VDRC]
 
|-
 
|-
 
|Deficiencies || [https://bdsc.indiana.edu/stocks/df/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto]
 
|Deficiencies || [https://bdsc.indiana.edu/stocks/df/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto]
Line 54: Line 54:
 
|Duplications || [https://bdsc.indiana.edu/stocks/dp/index.html BDSC], [https://www.genetivision.com/duplication.html GenetiVision]
 
|Duplications || [https://bdsc.indiana.edu/stocks/dp/index.html BDSC], [https://www.genetivision.com/duplication.html GenetiVision]
 
|-
 
|-
−
|style="background: #efefef;"|RNAi ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/rnai/index.html BDSC], [http://www.shigen.nig.ac.jp/fly/nigfly/ NIG-FLY], [https://thfc.zzbd.org/en THFC], [http://stockcenter.vdrc.at/control/library_rnai VDRC]
+
|style="background: #efefef;"|RNAi ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/rnai/index.html BDSC], [http://www.shigen.nig.ac.jp/fly/nigfly/ NIG-FLY], [https://thfc.zzbd.org/en THFC], [https://shop.vbc.ac.at/vdrc_store/ VDRC]
 
|-
 
|-
−
|GAL4 || [https://bdsc.indiana.edu/stocks/gal4/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/GAL4.html Kyoto], [http://stockcenter.vdrc.at/control/library_vt VDRC],  
+
|GAL4 || [https://bdsc.indiana.edu/stocks/gal4/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/GAL4.html Kyoto], [https://shop.vbc.ac.at/vdrc_store/ VDRC],  
 
|-
 
|-
 
|style="background: #efefef;"|UAS ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/uas/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/UAS.html Kyoto], [http://flyorf.ch/ FlyOrf]
 
|style="background: #efefef;"|UAS ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/uas/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/UAS.html Kyoto], [http://flyorf.ch/ FlyOrf]
Line 62: Line 62:
 
|Fluors || [https://bdsc.indiana.edu/stocks/gfp/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto]
 
|Fluors || [https://bdsc.indiana.edu/stocks/gfp/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto]
 
|-
 
|-
−
|style="background: #efefef;"|Tagged proteins under native control ||style="background: #efefef;"| [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto], [http://stockcenter.vdrc.at/control/library_ftrg VDRC]
+
|style="background: #efefef;"|Tagged proteins under native control ||style="background: #efefef;"| [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto], [https://shop.vbc.ac.at/vdrc_store/ VDRC]
 
|-
 
|-
−
|CRISPR || [https://bdsc.indiana.edu/stocks/genome_editing/index.html BDSC], [http://www.shigen.nig.ac.jp/fly/nigfly/cas9ListAction.do NIG-FLY], [https://thfc.zzbd.org/en THFC], [https://stockcenter.vdrc.at/control/library_hdcfd VDRC]
+
|CRISPR || [https://bdsc.indiana.edu/stocks/genome_editing/index.html BDSC], [http://www.shigen.nig.ac.jp/fly/nigfly/cas9ListAction.do NIG-FLY], [https://thfc.zzbd.org/en THFC], [https://shop.vbc.ac.at/vdrc_store/ VDRC]
 
|-
 
|-
 
|style="background: #efefef;"|phiC31 ||style="background: #efefef;"|[https://bdsc.indiana.edu/stocks/phic31/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/phiC31.html Kyoto]
 
|style="background: #efefef;"|phiC31 ||style="background: #efefef;"|[https://bdsc.indiana.edu/stocks/phic31/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/phiC31.html Kyoto]
Line 81: Line 81:
 
|-
 
|-
 
|style="background: #efefef;"|FlyTrap || style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/gfp/gfp_flytrap.html BDSC]
 
|style="background: #efefef;"|FlyTrap || style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/gfp/gfp_flytrap.html BDSC]
 +
|-
 +
|Drosophila Genetic Reference Panel (DGRP) || [https://bdsc.indiana.edu/stocks/wt/dgrp.html BDSC]
 +
|-
 +
|style="background: #efefef;"|DrosDel || style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/misc/drosdel-starter.html BDSC]
 
|}
 
|}
  
 
<br/>
 
<br/>
  
−
= <em>D. melanogaster</em> Stock Collection Informational Sites =
+
= <em>D. melanogaster</em> Stock Collection Informational Sites and Notes for Authors =
  
 
{|cellpadding=3
 
{|cellpadding=3
Line 91: Line 95:
 
!style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source
 
!style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source
 
|-
 
|-
−
|style="background: #efefef;"| [http://www.crisprflydesign.org/flies/ CRISPR fly design] ||style="background: #efefef;"| Details of a set of Cas9 transgenic <em>D. melanogaster</em> lines [https://bdsc.indiana.edu/stocks/genome_editing/crispr_cas9.html available at the BDSC] and  [http://stockcenter.vdrc.at/control/library_ftrg VDRC]. ||style="background: #efefef;"| MRC Laboratory of Molecular Biology<br /> Cambridge, UK
+
|style="background: #efefef;"| [http://crisprflydesign.org/ CRISPR fly design] ||style="background: #efefef;"| Details of a set of Cas9 transgenic <em>D. melanogaster</em> lines available at [https://bdsc.indiana.edu/stocks/genome_editing/crispr_cas9.html BDSC] and  [https://shop.vbc.ac.at/vdrc_store/ VDRC]. ||style="background: #efefef;"| MRC Laboratory of Molecular Biology<br /> Cambridge, UK
 +
|-
 +
| [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2013729/ DrosDel: An isogenic deficiency kit for Drosophila melanogaster]|| Information about isogenic deficiency lines generated by the DrosDel Project. A starter set is avaialbe at [https://bdsc.indiana.edu/stocks/misc/drosdel-starter.html BDSC]|| University of Cambridge<br/> Cambridge, UK
 +
|-
 +
|style="background: #efefef;"| [https://www.hgsc.bcm.edu/arthropods/drosophila-genetic-reference-panel Drosophila Genetic Reference Panel (DGRP)] ||style="background: #efefef;"| Details regarding the DGRP lines available at [https://bdsc.indiana.edu/stocks/wt/dgrp.html BDSC]. Includes a general summary and links to informative websites and references. ||style="white-space: nowrap; background: #efefef;"| Human Genome Sequencing Center<br/> Baylor College of Medicine<br/> Houston, TX, USA
 
|-
 
|-
−
| [http://www.drosdel.org.uk/ DrosDel: An isogenic deficiency kit for Drosophila melanogaster]|| Information about isogenic deficiency lines generated by the DrosDel Project. || University of Cambridge<br/> Cambridge, UK
+
| [https://flypush.research.bcm.edu/pscreen/index.php Gene Disruption Project (GDP)] || Information about insertion lines produced by the Gene Disruption Project (GDP). || Baylor College of Medicine<br/> Houston, TX, USA
 
|-
 
|-
−
|style="background: #efefef;"| [https://www.hgsc.bcm.edu/arthropods/drosophila-genetic-reference-panel Drosophila Genetic Reference Panel (DGRP)] ||style="background: #efefef;"| Details regarding the DGRP lines [http://flystocks.bio.indiana.edu/Browse/DGRP.php available at the BDSC]. Includes a general summary and links to informative websites and references. ||style="white-space: nowrap; background: #efefef;"| Human Genome Sequencing Center<br/> Baylor College of Medicine<br/> Houston, TX, USA
+
|style="background: #efefef;"| [https://flypush.research.bcm.edu/pscreen/rmce/ GDP MiMIC RMCE Lines] ||style="background: #efefef;| Information about MiMIC RMCE Lines from the Gene Disruption Project. ||style="background: #efefef;| Baylor College of Medicine<br/> Houston, TX, USA
 
|-
 
|-
−
| [http://www.ehime-u.ac.jp/~scibio/evolut/DSEU_photo/ Ehime University fly species photographs] || Photographs of 102 species of <em>Drosophila</em> stocks at Ehime University. || Ehime University<br/> Matsuyama, Ehime, Japan
+
| [https://flypush.research.bcm.edu/pscreen/transposons.php GDP Transposon Schematics] || Schematic illustrations of transposons featured in the Gene Disruption Project database. || Baylor College of Medicine<br/> Houston, TX, USA
 
|-
 
|-
−
| [http://flypush.imgen.bcm.tmc.edu/pscreen/ Gene Disruption Project (GDP)] || Information about insertion lines produced by the Gene Disruption Project (GDP). || Baylor College of Medicine<br/> Houston, TX, USA
+
|style="background: #efefef;"| [https://www.janelia.org/project-team/flylight Janelia FlyLight Project] ||style="background: #efefef;| Large anatomical data sets and highly characterized collections of GAL4, LexA and Split-GAL4 drivers to enable the visualization and precise manipulation of individual cell types in the adult and larval <em>Drosophila</em> nervous systems. Stocks are [http://flystocks.bio.indiana.edu/Browse/gal4/gal4_Janelia.php available at the BDSC]. ||style="background: #efefef;| Janelia Research Campus<br/> Ashburn, VA, USA
 
|-
 
|-
−
|style="background: #efefef;"| [http://flypush.imgen.bcm.tmc.edu/pscreen/rmce/ GDP MiMIC RMCE Lines] ||style="background: #efefef;| Information about MiMIC RMCE Lines from the Gene Disruption Project. ||style="background: #efefef;| Baylor College of Medicine<br/> Houston, TX, USA
+
| [https://kyotofly.kit.jp/cgi-bin/ehime/photo_data_list.cgi Ehime University fly species photographs] || Photographs of 102 species of <em>Drosophila</em> stocks at Ehime University. || Ehime University<br/> Matsuyama, Ehime, Japan
 
|-
 
|-
−
| [http://flypush.imgen.bcm.tmc.edu/pscreen/transposons.html GDP Transposon Schematics] || Schematic illustrations of transposons featured in the Gene Disruption Project database. || Baylor College of Medicine<br/> Houston, TX, USA
+
|style="background: #efefef;"| [[FlyBase:Transgenics Drosophila Stocks Log|Information template for transgenic fly lines]] ||style="background: #efefef;| A form to store important and helpful information when generating transgenic fly lines. ||style="background: #efefef;| FlyBase and Manchester Fly Facility<br/> Manchester, UK
 
|-
 
|-
−
|style="background: #efefef;"| [https://www.janelia.org/project-team/flylight Janelia FlyLight Project] ||style="background: #efefef;| Large anatomical data sets and highly characterized collections of GAL4, LexA and Split-GAL4 drivers to enable the visualization and precise manipulation of individual cell types in the adult and larval <em>Drosophila</em> nervous systems. Stocks are [http://flystocks.bio.indiana.edu/Browse/gal4/gal4_Janelia.php available at the BDSC]. ||style="background: #efefef;| Janelia Research Campus<br/> Ashburn, VA, USA
 
 
|}
 
|}
 
<br/>
 
<br/>
Line 115: Line 122:
 
!style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source
 
!style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source
 
|-
 
|-
−
|style="background: #efefef; white-space: nowrap;"| [https://kyotofly.kit.jp/cgi-bin/ehime/photo_data_list.cgi EHIME-Fly]||style="background: #efefef;"| Wild type stocks of <em>Drosophila</em> species that have been recorded in Japan. EHIME-Fly maintains and distributes over 130 species, represented by approximately 1450 stocks. ||style="background: #efefef; white-space: nowrap;"| Ehime University<br/> Matsuyama, Ehime, Japan
+
|style="background: #efefef;"| [https://kyotofly.kit.jp/cgi-bin/ehime/photo_data_list.cgi EHIME-Fly]||style="background: #efefef;"| Wild type stocks of <em>Drosophila</em> species that have been recorded in Japan. EHIME-Fly was closed on the 30th of September, 2018. Most of the stocks were transferred to KYORIN-Fly and KYOTO Stock Center. || style="background: #efefef;| Ehime University<br/> Matsuyama, Ehime, Japan
 
|-
 
|-
 
| [http://blogs.cornell.edu/drosophila/ NDSSC, National Drosophila Species Stock Center] || The DSSC maintains a living collection of over 250 <em>Drosophila</em> species represented by approximately 1090 stocks. || Cornell University<br/> Ithaca, NY, USA
 
| [http://blogs.cornell.edu/drosophila/ NDSSC, National Drosophila Species Stock Center] || The DSSC maintains a living collection of over 250 <em>Drosophila</em> species represented by approximately 1090 stocks. || Cornell University<br/> Ithaca, NY, USA

Latest revision as of 08:50, 21 October 2024

Popular Resource Categories

All Resources CRISPR ScRNA-Seq RNAi Stocks Antibodies Neuroscience
Model Organism
Databases		 Images Maps Protocols Papers with
Technical Advances		 Gene Set
Enrichment Tools

D. melanogaster Stock Collections

Resource Description Author/Source
Bloomington Drosophila Stock Center (BDSC) A diverse collection of stocks useful for a wide range of research applications. Bloomington Drosophila Stock Center (BDSC)
Indiana University
Bloomington, IN, USA
Exelixis The Exelixis Collection of transgenic insertion stocks at Harvard Medical School is no longer being maintained as of October 15, 2019. Harvard Medical School
Boston, MA, USA
FlyORF Well characterized transgenic UAS-ORF lines. Approximately 2,400 fly stocks comprising about 1900 genes, generated using the phiC31 integrase method. FlyORF
University of Zurich
Zurich, Switzerland
Korea Drosophila Resource Center Transgenic and mutant fly stocks and micro-injection services Gwangju Institute of Science and Technology
Gwangju, Republic of Korea
Kyoto Stock Center The Kyoto Stock Center collects, maintains and distributes Drosophila melanogaster strains for research. Kyoto Stock Center
Kyoto Institute of Technology
Kyoto, Japan
NIG-FLY NIG-RNAi stocks and TRiP Stocks for RNA interference experiments. NIG-FLY
National Institute of Genetics
Mishima, Japan
THFC, Tsinghua Fly Center Resources and technical services in support of RNAi, CRISPR, and gene overexpression experiments Tsinghua Fly Center (THFC)
Tsinghua University
Beijing, China
Vienna Drosophila Resource Center (VDRC) Transgenic Drosophila RNAi libraries, a collection of enhancer-GAL4 driver lines, the Tagged FlyFos TransgeneOme (fTRG) library, the Heidelberg CFD CRISPR Library and other diverse collections including tagged constructs, mutant alleles and reporters. Vienna Drosophila Resource Center (VDRC)
Vienna Biocenter Core Facilities GmbH
Vienna, Austria


D. melanogaster Stock Collections by Specific Category

Stock Category Availability
Human Disease Models BDSC, Kyoto, VDRC
Deficiencies BDSC, Kyoto
Insertions BDSC, Kyoto, GDP
Duplications BDSC, GenetiVision
RNAi BDSC, NIG-FLY, THFC, VDRC
GAL4 BDSC, Kyoto, VDRC,
UAS BDSC, Kyoto, FlyOrf
Fluors BDSC, Kyoto
Tagged proteins under native control Kyoto, VDRC
CRISPR BDSC, NIG-FLY, THFC, VDRC
phiC31 BDSC, Kyoto
FLP/FRT BDSC, Kyoto
Balancers BDSC, Kyoto
Reference Genome strain (iso-1) BDSC
Sequenced strains BDSC
Wildtype stocks BDSC, Kyoto
Non-melanogaster Drosophila species DSSC, EHIME-Fly, KYORIN-Fly
FlyTrap BDSC
Drosophila Genetic Reference Panel (DGRP) BDSC
DrosDel BDSC


D. melanogaster Stock Collection Informational Sites and Notes for Authors

Resource Description Author/Source
CRISPR fly design Details of a set of Cas9 transgenic D. melanogaster lines available at BDSC and VDRC. MRC Laboratory of Molecular Biology
Cambridge, UK
DrosDel: An isogenic deficiency kit for Drosophila melanogaster Information about isogenic deficiency lines generated by the DrosDel Project. A starter set is avaialbe at BDSC University of Cambridge
Cambridge, UK
Drosophila Genetic Reference Panel (DGRP) Details regarding the DGRP lines available at BDSC. Includes a general summary and links to informative websites and references. Human Genome Sequencing Center
Baylor College of Medicine
Houston, TX, USA
Gene Disruption Project (GDP) Information about insertion lines produced by the Gene Disruption Project (GDP). Baylor College of Medicine
Houston, TX, USA
GDP MiMIC RMCE Lines Information about MiMIC RMCE Lines from the Gene Disruption Project. Baylor College of Medicine
Houston, TX, USA
GDP Transposon Schematics Schematic illustrations of transposons featured in the Gene Disruption Project database. Baylor College of Medicine
Houston, TX, USA
Janelia FlyLight Project Large anatomical data sets and highly characterized collections of GAL4, LexA and Split-GAL4 drivers to enable the visualization and precise manipulation of individual cell types in the adult and larval Drosophila nervous systems. Stocks are available at the BDSC. Janelia Research Campus
Ashburn, VA, USA
Ehime University fly species photographs Photographs of 102 species of Drosophila stocks at Ehime University. Ehime University
Matsuyama, Ehime, Japan
Information template for transgenic fly lines A form to store important and helpful information when generating transgenic fly lines. FlyBase and Manchester Fly Facility
Manchester, UK


Drosophila Species Collections

Resource Description Author/Source
EHIME-Fly Wild type stocks of Drosophila species that have been recorded in Japan. EHIME-Fly was closed on the 30th of September, 2018. Most of the stocks were transferred to KYORIN-Fly and KYOTO Stock Center. Ehime University
Matsuyama, Ehime, Japan
NDSSC, National Drosophila Species Stock Center The DSSC maintains a living collection of over 250 Drosophila species represented by approximately 1090 stocks. Cornell University
Ithaca, NY, USA
KYORIN-Fly Mutant and wild type stocks of Drosophila species, especially the Drosophila ananassae species subgroup, D. auraria complex, and D. hydei. Kyorin University
Shinkawa, Mitaka, Tokyo, Japan



  Back to top. | Back to All Resources Page. | Provide Feedback.

Retrieved from "https://wiki.flybase.org/mediawiki/index.php?title=FlyBase:Stocks&oldid=173068"