Difference between revisions of "FlyBase:Stocks"
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− | |style="text-align: center; padding: 20px;"| <big>[[FlyBase:Model_Organism_Databases|Model Organism<br/> Databases]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Images|Images]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Maps|Maps]]</big> ||style="text-align: center; padding: 20px;"| <big>[http://www.flyrnai.org/tools/protocols/web/ Protocols]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Papers_with_technical_advances|Papers with<br/> Technical Advances]]</big> | + | |style="text-align: center; padding: 20px;"| <big>[[FlyBase:Model_Organism_Databases|Model Organism<br/> Databases]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Images|Images]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Maps|Maps]]</big> ||style="text-align: center; padding: 20px;"| <big>[http://www.flyrnai.org/tools/protocols/web/ Protocols]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Papers_with_technical_advances|Papers with<br/> Technical Advances]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:GSEA|Gene Set<br/> Enrichment Tools]]</big> |
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!style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | !style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | ||
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− | |style=" | + | | style="white-space: nowrap;"| [https://bdsc.indiana.edu/ Bloomington Drosophila Stock Center (BDSC)] || A diverse collection of stocks useful for a wide range of research applications. || Bloomington Drosophila Stock Center (BDSC)<br/> Indiana University<br/> Bloomington, IN, USA |
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|style="background: #efefef;"| Exelixis ||style="background: #efefef;"| The Exelixis Collection of transgenic insertion stocks at Harvard Medical School is no longer being maintained as of October 15, 2019. ||style="background: #efefef;"| Harvard Medical School<br/> Boston, MA, USA | |style="background: #efefef;"| Exelixis ||style="background: #efefef;"| The Exelixis Collection of transgenic insertion stocks at Harvard Medical School is no longer being maintained as of October 15, 2019. ||style="background: #efefef;"| Harvard Medical School<br/> Boston, MA, USA | ||
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|style="white-space: nowrap;"| [http://flyorf.ch/ FlyORF] || Well characterized transgenic UAS-ORF lines. Approximately 2,400 fly stocks comprising about 1900 genes, generated using the phiC31 integrase method. || FlyORF<br/> University of Zurich<br/> Zurich, Switzerland | |style="white-space: nowrap;"| [http://flyorf.ch/ FlyORF] || Well characterized transgenic UAS-ORF lines. Approximately 2,400 fly stocks comprising about 1900 genes, generated using the phiC31 integrase method. || FlyORF<br/> University of Zurich<br/> Zurich, Switzerland | ||
+ | |- | ||
+ | |style="background: #efefef;"| [http://kdrc.kr/index.php Korea Drosophila Resource Center] ||style="background: #efefef;"| Transgenic and mutant fly stocks and micro-injection services ||style="background: #efefef;" | Gwangju Institute of Science and Technology<br/> Gwangju, Republic of Korea | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto Stock Center] || The Kyoto Stock Center collects, maintains and distributes <em>Drosophila melanogaster</em> strains for research. ||style="white-space: nowrap;"| Kyoto Stock Center<br/> Kyoto Institute of Technology<br/> Kyoto, Japan | ||
|- | |- | ||
|style="background: #efefef;"| [http://www.shigen.nig.ac.jp/fly/nigfly/ NIG-FLY] ||style="background: #efefef;"| NIG-RNAi stocks and TRiP Stocks for RNA interference experiments. ||style="background: #efefef;"| NIG-FLY<br/> National Institute of Genetics<br/> Mishima, Japan | |style="background: #efefef;"| [http://www.shigen.nig.ac.jp/fly/nigfly/ NIG-FLY] ||style="background: #efefef;"| NIG-RNAi stocks and TRiP Stocks for RNA interference experiments. ||style="background: #efefef;"| NIG-FLY<br/> National Institute of Genetics<br/> Mishima, Japan | ||
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− | | style="white-space: nowrap;"|[ | + | | style="white-space: nowrap;"| [https://thfc.zzbd.org/en THFC, Tsinghua Fly Center]|| Resources and technical services in support of RNAi, CRISPR, and gene overexpression experiments || Tsinghua Fly Center (THFC)<br/> Tsinghua University <br/> Beijing, China |
+ | |- | ||
+ | |style="background: #efefef;"| [https://shop.vbc.ac.at/vdrc_store/ Vienna Drosophila Resource Center (VDRC)] ||style="background: #efefef;"| Transgenic <em>Drosophila</em> RNAi libraries, a collection of enhancer-GAL4 driver lines, the Tagged FlyFos TransgeneOme (fTRG) library, the Heidelberg CFD CRISPR Library and other diverse collections including tagged constructs, mutant alleles and reporters. ||style="background: #efefef;"| Vienna Drosophila Resource Center (VDRC)<br/> Vienna Biocenter Core Facilities GmbH<br/> Vienna, Austria | ||
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+ | |||
|} | |} | ||
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!style="background: #efefef;"| Stock Category !!style="background: #efefef;"| Availability | !style="background: #efefef;"| Stock Category !!style="background: #efefef;"| Availability | ||
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− | |style="background: #efefef; white-space: nowrap;"| Human Disease Models ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/hd/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/disease_ontology.html Kyoto], [https:// | + | |style="background: #efefef; white-space: nowrap;"| Human Disease Models ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/hd/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/disease_ontology.html Kyoto], [https://shop.vbc.ac.at/vdrc_store/ VDRC] |
|- | |- | ||
|Deficiencies || [https://bdsc.indiana.edu/stocks/df/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto] | |Deficiencies || [https://bdsc.indiana.edu/stocks/df/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto] | ||
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− | |style="background: #efefef;"|Insertions ||style="background: #efefef;"|[https://bdsc.indiana.edu/stocks/in/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto], [https | + | |style="background: #efefef;"|Insertions ||style="background: #efefef;"|[https://bdsc.indiana.edu/stocks/in/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto], [https://flypush.research.bcm.edu/pscreen/index.php GDP] |
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− | |Duplications || [https://bdsc.indiana.edu/stocks/dp/index.html BDSC], [ | + | |Duplications || [https://bdsc.indiana.edu/stocks/dp/index.html BDSC], [https://www.genetivision.com/duplication.html GenetiVision] |
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− | |style="background: #efefef;"|RNAi ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/rnai/index.html BDSC], [http://www.shigen.nig.ac.jp/fly/nigfly/ NIG-FLY], [ | + | |style="background: #efefef;"|RNAi ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/rnai/index.html BDSC], [http://www.shigen.nig.ac.jp/fly/nigfly/ NIG-FLY], [https://thfc.zzbd.org/en THFC], [https://shop.vbc.ac.at/vdrc_store/ VDRC] |
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− | |GAL4 || [https://bdsc.indiana.edu/stocks/gal4/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/GAL4.html Kyoto], [ | + | |GAL4 || [https://bdsc.indiana.edu/stocks/gal4/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/GAL4.html Kyoto], [https://shop.vbc.ac.at/vdrc_store/ VDRC], |
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|style="background: #efefef;"|UAS ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/uas/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/UAS.html Kyoto], [http://flyorf.ch/ FlyOrf] | |style="background: #efefef;"|UAS ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/uas/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/UAS.html Kyoto], [http://flyorf.ch/ FlyOrf] | ||
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|Fluors || [https://bdsc.indiana.edu/stocks/gfp/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto] | |Fluors || [https://bdsc.indiana.edu/stocks/gfp/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto] | ||
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− | |style="background: #efefef;"|Tagged proteins under native control ||style="background: #efefef;"| [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto], [ | + | |style="background: #efefef;"|Tagged proteins under native control ||style="background: #efefef;"| [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto], [https://shop.vbc.ac.at/vdrc_store/ VDRC] |
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− | |CRISPR || [https://bdsc.indiana.edu/stocks/genome_editing/index.html BDSC], [http://www.shigen.nig.ac.jp/fly/nigfly/cas9ListAction.do NIG-FLY], | + | |CRISPR || [https://bdsc.indiana.edu/stocks/genome_editing/index.html BDSC], [http://www.shigen.nig.ac.jp/fly/nigfly/cas9ListAction.do NIG-FLY], [https://thfc.zzbd.org/en THFC], [https://shop.vbc.ac.at/vdrc_store/ VDRC] |
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|style="background: #efefef;"|phiC31 ||style="background: #efefef;"|[https://bdsc.indiana.edu/stocks/phic31/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/phiC31.html Kyoto] | |style="background: #efefef;"|phiC31 ||style="background: #efefef;"|[https://bdsc.indiana.edu/stocks/phic31/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/phiC31.html Kyoto] | ||
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|Non-<em>melanogaster</em> <em>Drosophila</em> species || [https://stockcenter.ucsd.edu/index.php?table=Species&sort=location+desc DSSC], [https://kyotofly.kit.jp/cgi-bin/ehime/photo_data_list.cgi EHIME-Fly], [http://www.shigen.nig.ac.jp/fly/kyorin/cgi-bin/index.cgi KYORIN-Fly] | |Non-<em>melanogaster</em> <em>Drosophila</em> species || [https://stockcenter.ucsd.edu/index.php?table=Species&sort=location+desc DSSC], [https://kyotofly.kit.jp/cgi-bin/ehime/photo_data_list.cgi EHIME-Fly], [http://www.shigen.nig.ac.jp/fly/kyorin/cgi-bin/index.cgi KYORIN-Fly] | ||
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+ | |style="background: #efefef;"|FlyTrap || style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/gfp/gfp_flytrap.html BDSC] | ||
+ | |- | ||
+ | |Drosophila Genetic Reference Panel (DGRP) || [https://bdsc.indiana.edu/stocks/wt/dgrp.html BDSC] | ||
+ | |- | ||
+ | |style="background: #efefef;"|DrosDel || style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/misc/drosdel-starter.html BDSC] | ||
|} | |} | ||
<br/> | <br/> | ||
− | = <em>D. melanogaster</em> Stock Collection Informational Sites = | + | = <em>D. melanogaster</em> Stock Collection Informational Sites and Notes for Authors = |
{|cellpadding=3 | {|cellpadding=3 | ||
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!style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | !style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | ||
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− | |style="background: #efefef;"| [http:// | + | |style="background: #efefef;"| [http://crisprflydesign.org/ CRISPR fly design] ||style="background: #efefef;"| Details of a set of Cas9 transgenic <em>D. melanogaster</em> lines available at [https://bdsc.indiana.edu/stocks/genome_editing/crispr_cas9.html BDSC] and [https://shop.vbc.ac.at/vdrc_store/ VDRC]. ||style="background: #efefef;"| MRC Laboratory of Molecular Biology<br /> Cambridge, UK |
+ | |- | ||
+ | | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2013729/ DrosDel: An isogenic deficiency kit for Drosophila melanogaster]|| Information about isogenic deficiency lines generated by the DrosDel Project. A starter set is avaialbe at [https://bdsc.indiana.edu/stocks/misc/drosdel-starter.html BDSC]|| University of Cambridge<br/> Cambridge, UK | ||
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− | | [ | + | |style="background: #efefef;"| [https://www.hgsc.bcm.edu/arthropods/drosophila-genetic-reference-panel Drosophila Genetic Reference Panel (DGRP)] ||style="background: #efefef;"| Details regarding the DGRP lines available at [https://bdsc.indiana.edu/stocks/wt/dgrp.html BDSC]. Includes a general summary and links to informative websites and references. ||style="white-space: nowrap; background: #efefef;"| Human Genome Sequencing Center<br/> Baylor College of Medicine<br/> Houston, TX, USA |
|- | |- | ||
− | + | | [https://flypush.research.bcm.edu/pscreen/index.php Gene Disruption Project (GDP)] || Information about insertion lines produced by the Gene Disruption Project (GDP). || Baylor College of Medicine<br/> Houston, TX, USA | |
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− | | [ | + | |style="background: #efefef;"| [https://flypush.research.bcm.edu/pscreen/rmce/ GDP MiMIC RMCE Lines] ||style="background: #efefef;| Information about MiMIC RMCE Lines from the Gene Disruption Project. ||style="background: #efefef;| Baylor College of Medicine<br/> Houston, TX, USA |
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− | + | | [https://flypush.research.bcm.edu/pscreen/transposons.php GDP Transposon Schematics] || Schematic illustrations of transposons featured in the Gene Disruption Project database. || Baylor College of Medicine<br/> Houston, TX, USA | |
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− | | [ | + | |style="background: #efefef;"| [https://www.janelia.org/project-team/flylight Janelia FlyLight Project] ||style="background: #efefef;| Large anatomical data sets and highly characterized collections of GAL4, LexA and Split-GAL4 drivers to enable the visualization and precise manipulation of individual cell types in the adult and larval <em>Drosophila</em> nervous systems. Stocks are [http://flystocks.bio.indiana.edu/Browse/gal4/gal4_Janelia.php available at the BDSC]. ||style="background: #efefef;| Janelia Research Campus<br/> Ashburn, VA, USA |
|- | |- | ||
− | + | | [https://kyotofly.kit.jp/cgi-bin/ehime/photo_data_list.cgi Ehime University fly species photographs] || Photographs of 102 species of <em>Drosophila</em> stocks at Ehime University. || Ehime University<br/> Matsuyama, Ehime, Japan | |
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− | | [ | + | |style="background: #efefef;"| [[FlyBase:Transgenics Drosophila Stocks Log|Information template for transgenic fly lines]] ||style="background: #efefef;| A form to store important and helpful information when generating transgenic fly lines. ||style="background: #efefef;| FlyBase and Manchester Fly Facility<br/> Manchester, UK |
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− | |||
|} | |} | ||
<br/> | <br/> | ||
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!style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | !style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | ||
|- | |- | ||
− | |style="background: #efefef | + | |style="background: #efefef;"| [https://kyotofly.kit.jp/cgi-bin/ehime/photo_data_list.cgi EHIME-Fly]||style="background: #efefef;"| Wild type stocks of <em>Drosophila</em> species that have been recorded in Japan. EHIME-Fly was closed on the 30th of September, 2018. Most of the stocks were transferred to KYORIN-Fly and KYOTO Stock Center. || style="background: #efefef;| Ehime University<br/> Matsuyama, Ehime, Japan |
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| [http://blogs.cornell.edu/drosophila/ NDSSC, National Drosophila Species Stock Center] || The DSSC maintains a living collection of over 250 <em>Drosophila</em> species represented by approximately 1090 stocks. || Cornell University<br/> Ithaca, NY, USA | | [http://blogs.cornell.edu/drosophila/ NDSSC, National Drosophila Species Stock Center] || The DSSC maintains a living collection of over 250 <em>Drosophila</em> species represented by approximately 1090 stocks. || Cornell University<br/> Ithaca, NY, USA |
Latest revision as of 08:50, 21 October 2024
Popular Resource Categories
All Resources | CRISPR | ScRNA-Seq | RNAi | Stocks | Antibodies | Neuroscience |
Model Organism Databases |
Images | Maps | Protocols | Papers with Technical Advances |
Gene Set Enrichment Tools |
D. melanogaster Stock Collections
Resource | Description | Author/Source |
---|---|---|
Bloomington Drosophila Stock Center (BDSC) | A diverse collection of stocks useful for a wide range of research applications. | Bloomington Drosophila Stock Center (BDSC) Indiana University Bloomington, IN, USA |
Exelixis | The Exelixis Collection of transgenic insertion stocks at Harvard Medical School is no longer being maintained as of October 15, 2019. | Harvard Medical School Boston, MA, USA |
FlyORF | Well characterized transgenic UAS-ORF lines. Approximately 2,400 fly stocks comprising about 1900 genes, generated using the phiC31 integrase method. | FlyORF University of Zurich Zurich, Switzerland |
Korea Drosophila Resource Center | Transgenic and mutant fly stocks and micro-injection services | Gwangju Institute of Science and Technology Gwangju, Republic of Korea |
Kyoto Stock Center | The Kyoto Stock Center collects, maintains and distributes Drosophila melanogaster strains for research. | Kyoto Stock Center Kyoto Institute of Technology Kyoto, Japan |
NIG-FLY | NIG-RNAi stocks and TRiP Stocks for RNA interference experiments. | NIG-FLY National Institute of Genetics Mishima, Japan |
THFC, Tsinghua Fly Center | Resources and technical services in support of RNAi, CRISPR, and gene overexpression experiments | Tsinghua Fly Center (THFC) Tsinghua University Beijing, China |
Vienna Drosophila Resource Center (VDRC) | Transgenic Drosophila RNAi libraries, a collection of enhancer-GAL4 driver lines, the Tagged FlyFos TransgeneOme (fTRG) library, the Heidelberg CFD CRISPR Library and other diverse collections including tagged constructs, mutant alleles and reporters. | Vienna Drosophila Resource Center (VDRC) Vienna Biocenter Core Facilities GmbH Vienna, Austria |
D. melanogaster Stock Collections by Specific Category
Stock Category | Availability |
---|---|
Human Disease Models | BDSC, Kyoto, VDRC |
Deficiencies | BDSC, Kyoto |
Insertions | BDSC, Kyoto, GDP |
Duplications | BDSC, GenetiVision |
RNAi | BDSC, NIG-FLY, THFC, VDRC |
GAL4 | BDSC, Kyoto, VDRC, |
UAS | BDSC, Kyoto, FlyOrf |
Fluors | BDSC, Kyoto |
Tagged proteins under native control | Kyoto, VDRC |
CRISPR | BDSC, NIG-FLY, THFC, VDRC |
phiC31 | BDSC, Kyoto |
FLP/FRT | BDSC, Kyoto |
Balancers | BDSC, Kyoto |
Reference Genome strain (iso-1) | BDSC |
Sequenced strains | BDSC |
Wildtype stocks | BDSC, Kyoto |
Non-melanogaster Drosophila species | DSSC, EHIME-Fly, KYORIN-Fly |
FlyTrap | BDSC |
Drosophila Genetic Reference Panel (DGRP) | BDSC |
DrosDel | BDSC |
D. melanogaster Stock Collection Informational Sites and Notes for Authors
Resource | Description | Author/Source |
---|---|---|
CRISPR fly design | Details of a set of Cas9 transgenic D. melanogaster lines available at BDSC and VDRC. | MRC Laboratory of Molecular Biology Cambridge, UK |
DrosDel: An isogenic deficiency kit for Drosophila melanogaster | Information about isogenic deficiency lines generated by the DrosDel Project. A starter set is avaialbe at BDSC | University of Cambridge Cambridge, UK |
Drosophila Genetic Reference Panel (DGRP) | Details regarding the DGRP lines available at BDSC. Includes a general summary and links to informative websites and references. | Human Genome Sequencing Center Baylor College of Medicine Houston, TX, USA |
Gene Disruption Project (GDP) | Information about insertion lines produced by the Gene Disruption Project (GDP). | Baylor College of Medicine Houston, TX, USA |
GDP MiMIC RMCE Lines | Information about MiMIC RMCE Lines from the Gene Disruption Project. | Baylor College of Medicine Houston, TX, USA |
GDP Transposon Schematics | Schematic illustrations of transposons featured in the Gene Disruption Project database. | Baylor College of Medicine Houston, TX, USA |
Janelia FlyLight Project | Large anatomical data sets and highly characterized collections of GAL4, LexA and Split-GAL4 drivers to enable the visualization and precise manipulation of individual cell types in the adult and larval Drosophila nervous systems. Stocks are available at the BDSC. | Janelia Research Campus Ashburn, VA, USA |
Ehime University fly species photographs | Photographs of 102 species of Drosophila stocks at Ehime University. | Ehime University Matsuyama, Ehime, Japan |
Information template for transgenic fly lines | A form to store important and helpful information when generating transgenic fly lines. | FlyBase and Manchester Fly Facility Manchester, UK |
Drosophila Species Collections
Resource | Description | Author/Source |
---|---|---|
EHIME-Fly | Wild type stocks of Drosophila species that have been recorded in Japan. EHIME-Fly was closed on the 30th of September, 2018. Most of the stocks were transferred to KYORIN-Fly and KYOTO Stock Center. | Ehime University Matsuyama, Ehime, Japan |
NDSSC, National Drosophila Species Stock Center | The DSSC maintains a living collection of over 250 Drosophila species represented by approximately 1090 stocks. | Cornell University Ithaca, NY, USA |
KYORIN-Fly | Mutant and wild type stocks of Drosophila species, especially the Drosophila ananassae species subgroup, D. auraria complex, and D. hydei. | Kyorin University Shinkawa, Mitaka, Tokyo, Japan |
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