Difference between revisions of "FlyBase:FlyBase Help Index"
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'''Basic navigation series | '''Basic navigation series | ||
''' | ''' | ||
| − | *How to find all data related to a gene | + | *[https://www.youtube.com/watch?v=OlHv3zWt5cw How to find all data related to a gene] |
| − | *How to generate an excel file of all alleles of a gene | + | *[https://www.youtube.com/watch?v=xACOH8SYpoQ&t=60s How to generate an excel file of all alleles of a gene] |
| − | *Finding related genes in FlyBase: Gene Groups | + | *[https://www.youtube.com/watch?v=GQ_2X29Gx-E Finding related genes in FlyBase: Gene Groups] |
| − | *Finding related genes/alleles in FlyBase: Vocabularies | + | *[https://www.youtube.com/watch?v=jgCON15SiRo Finding related genes/alleles in FlyBase: Vocabularies] |
| − | *Finding related genes in FlyBase: The Gene Ontology | + | *[https://www.youtube.com/watch?v=XFCR8BRfGp0 Finding related genes in FlyBase: The Gene Ontology] |
| − | *Gene Snapshots in FlyBase | + | *[https://www.youtube.com/watch?v=6IDlJGXdIP8 Gene Snapshots in FlyBase] |
| − | *Finding genes with similar phenotypes | + | *[https://www.youtube.com/watch?v=hZgsDPypZvk Finding genes with similar phenotypes] |
'''Tools series | '''Tools series | ||
''' | ''' | ||
| − | *RNA-Seq Part I: Using GBrowse | + | *[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse] |
| − | *RNA-Seq Part II: Using RNA-Seq Profile Search | + | *[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part II: Using RNA-Seq Profile Search] |
| − | *RNA Seq Part III: Searching for Similarly Expressed Genes | + | *[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes] |
| − | *Finding related genes/alleles in FlyBase: Vocabularies | + | *[https://www.youtube.com/watch?v=jgCON15SiRo Finding related genes/alleles in FlyBase: Vocabularies] |
| − | *Using the Orthology search tool | + | *[https://www.youtube.com/watch?v=JsNyrNG28M0 Using the Orthology search tool] |
| − | *Finding related genes in FlyBase: The Gene Ontology | + | *[https://www.youtube.com/watch?v=XFCR8BRfGp0 Finding related genes in FlyBase: The Gene Ontology] |
| − | *Finding genes with similar phenotypes | + | *[https://www.youtube.com/watch?v=hZgsDPypZvk Finding genes with similar phenotypes] |
'''RNA-Seq series | '''RNA-Seq series | ||
''' | ''' | ||
| − | *RNA-Seq Part I: Using GBrowse | + | *[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse] |
| − | *RNA-Seq Part II: Using RNA-Seq Profile Search | + | *[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part II: Using RNA-Seq Profile Search] |
| − | *RNA Seq Part III: Searching for Similarly Expressed Genes | + | *[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes] |
'''FlyBase Guidelines | '''FlyBase Guidelines | ||
''' | ''' | ||
| − | *Author Guidelines | + | *[https://www.youtube.com/watch?v=HsoWqclXMng Author Guidelines] |
| − | *How to cite FlyBase | + | *[https://www.youtube.com/watch?v=16SGlcASOL4 How to cite FlyBase] |
== '''Data Documentation''' == | == '''Data Documentation''' == | ||
Revision as of 18:00, 5 December 2017
Video Tutorials
- FlyBase Video Tutorials on YouTube organized into four playlists.
Basic navigation series
- How to find all data related to a gene
- How to generate an excel file of all alleles of a gene
- Finding related genes in FlyBase: Gene Groups
- Finding related genes/alleles in FlyBase: Vocabularies
- Finding related genes in FlyBase: The Gene Ontology
- Gene Snapshots in FlyBase
- Finding genes with similar phenotypes
Tools series
- RNA-Seq Part I: Using GBrowse
- RNA-Seq Part II: Using RNA-Seq Profile Search
- RNA Seq Part III: Searching for Similarly Expressed Genes
- Finding related genes/alleles in FlyBase: Vocabularies
- Using the Orthology search tool
- Finding related genes in FlyBase: The Gene Ontology
- Finding genes with similar phenotypes
RNA-Seq series
- RNA-Seq Part I: Using GBrowse
- RNA-Seq Part II: Using RNA-Seq Profile Search
- RNA Seq Part III: Searching for Similarly Expressed Genes
FlyBase Guidelines
Data Documentation
Curation
- Controlled Vocabularies used by FlyBase
- Gene Ontology (GO) Annotation
- Nontraditional alleles
- Vectors and Constructs
Field by Field guides to FlyBase Reports
- All Reports
- Aberration Report
- Allele Report
- Balancer/Genotype variant Report
- Cell Line Report
- Clone Report
- Gene Report
- Human Disease Model Report
- Image Report
- Insertion Report
- Interaction Report
- Large Dataset Metadata Report
- Natural Transposon Report
- Person Report
- Polypeptide Report
- Recombinant Construct Report
- Reference Report
- Sequence Feature Report
- Strain Report
- Stock Report
- Transcript Report
- Vocabularies Term Report
Computed Fields
Downloads
Tools Documentation
Tools Overview
Query Tools Help
Genomic/Map tools Help
- BLAST
- CytoSearch
- FeatureMapper
- FlyBase GBrowse Help
- GBrowse Tracks
- FlyBase JBrowse Help
- JBrowse Tracks
Retrieve/Convert Tools Help
- Batch Download
- Coordinate Converter
- ID Converter
- Sequence Downloader
RNA-Seq Tools Help