Difference between revisions of "FlyBase:FlyBase Help Index"
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| Line 101: | Line 101: | ||
'''RNA-Seq Tools Help''' | '''RNA-Seq Tools Help''' | ||
| − | * [http://{{flybaseorg}} | + | * [http://{{flybaseorg}}/rnaseq/rnaseq RNA-Seq Overview] |
| − | * [http://{{flybaseorg}} | + | * [http://{{flybaseorg}}/rnaseq/region RNA-Seq by Region] |
| − | * [http://{{flybaseorg}} | + | * [http://{{flybaseorg}}/rnaseq/profile_search RNA-Seq Profile] |
| − | * [http://{{flybaseorg}} | + | * [http://{{flybaseorg}}/rnaseq/simsearch RNA-Seq Similarity] |
'''Downloads''' | '''Downloads''' | ||
Revision as of 21:27, 20 December 2017
Video Tutorials
- FlyBase Video Tutorials on YouTube organized into four playlists.
Basic navigation series
- How to find all data related to a gene
- How to generate an excel file of all alleles of a gene
- Finding related genes in FlyBase: Gene Groups
- Finding related genes/alleles in FlyBase: Vocabularies
- Finding related genes in FlyBase: The Gene Ontology
- Gene Snapshots in FlyBase
- Finding genes with similar phenotypes
Tools series
- RNA-Seq Part I: Using GBrowse
- RNA-Seq Part II: Using RNA-Seq Profile Search
- RNA Seq Part III: Searching for Similarly Expressed Genes
- Finding related genes/alleles in FlyBase: Vocabularies
- Using the Orthology search tool
- Finding related genes in FlyBase: The Gene Ontology
- Finding genes with similar phenotypes
RNA-Seq series
- RNA-Seq Part I: Using GBrowse
- RNA-Seq Part II: Using RNA-Seq Profile Search
- RNA Seq Part III: Searching for Similarly Expressed Genes
FlyBase Guidelines
Report Help
Field by Field guides to FlyBase Reports
- All Reports
- Aberration Report
- Allele Report
- Balancer/Genotype variant Report
- Cell Line Report
- Clone Report
- Dataset/Collection Report
- Gene Report
- Gene Group Report
- Human Disease Model Report
- Image Report
- Insertion Report
- Interaction Report
- Natural Transposon Report
- Person Report
- Polypeptide Report
- Recombinant Construct Report
- Reference Report
- Sequence Feature Report
- Strain Report
- Stock Report
- Transcript Report
- Vocabularies Term Report
Curation Documentation
- Controlled Vocabularies used by FlyBase
- Gene Model Annotation Guidelines
- Gene Ontology (GO) Annotation
- Nontraditional alleles
- Vectors and Constructs
Tools and Downloads Documentation
Tools Overview
Query Tools Help
Genomic/Map tools Help
- BLAST
- CytoSearch
- Feature Mapper
- FlyBase GBrowse Help
- GBrowse Tracks
- FlyBase JBrowse Help
- JBrowse Tracks
Retrieve/Convert Tools Help
- Batch Download
- Coordinate Converter
- ID Converter
- Sequence Downloader
RNA-Seq Tools Help
Downloads
Information for Authors
- Author Guidelines
- Citing FlyBase
- Fast Track Your Paper
- FlyBase Community
- Gene Snapshots
- Personal Communications to FlyBase