FlyBase:Neuroscience
Popular Resource Categories
| All Resources | CRISPR | RNAi | Stocks | Antibodies | Images | Neuroscience |
Databases of expression, anatomy and physiology
| Resource | Description | Author/Source |
|---|---|---|
| BrainBase | Database of images and annotations of expression for VT and enhancer trap GAL4 lines | Barry Dickson Lab formerly at Institute of Molecular Pathology Vienna, Austria Biomedical Visualization Group VRVis Vienna, Austria |
| BrainTrap | Database with expression of protein trap lines in the adult brain | Knowles-Barley et al., 2010 |
| FlyBrain Neuron NDB | Database of neuron, strain, antibody and brain regions data. | Laboratory of Structural Information Institute of Molecular and Cellular Biosciences The University of Tokyo Tokyo, Japan |
| FlyCircuit | Database for online archiving, cell type inventory, browsing, searching, analysis and 3D visualization of individual neuron images in the adult brain | Chiang et al., 2011 |
| FlyLight GAL4 lines | Database of expression patterns of GAL4 and LexA driver lines from Janelia Research Campus | Janelia FlyLight Project Team Gerry Rubin Lab James Truman Lab Richard Mann Lab Chris Doe Lab Janelia Research Campus Virginia, USA |
| FlyLight Split GAL4 lines | Database of expression patterns of Split GAL4 lines from Janelia Research Campus | Janelia FlyLight Project Team Gerry Rubin Lab Janelia Research Campus Virginia, USA |
| Fly Trap | Database of classical P(GAL4) enhancer traps imaged in head sections | Armstrong Lab University of Edinburgh Edinburgh, UK |
| DoOR | Database of odorant responses in Drosophila | Munch and Galizia, 2016 |
| NeuroMorpho | Curated inventory of digitally reconstructed neurons associated with peer-reviewed publications | Ascoli et al., 2007 |
| Insect Brain Database | Database of single neurons and brains for several insect species | Uwe Homberg Lab Randolf Menzel Lab Marie Dacke/Basil el Jundi Labs Bente Berg Lab Stanley Heinze Lab |
For viewing, analysing and querying images
| Resource | Description | Author/Source |
|---|---|---|
| Virtual Fly Brain | Interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of Drosophila melanogaster | Milyaev et al., 2012 |
| BrainGazer | Desktop interactive tool for advanced visualization and exploration of neural circuit data | Bruckner et al., 2009 |
| NBLAST | Tool to search for similar neurons by morphology and location | Costa et al., 2014 |
| Bridging registrations | This site provides the tools to transform image data from one template brain (adult Drosophila) to another, using a bridging registration. | Manton et al., 2014 |
| Braincode | Automated segmentation of the Drosophila brain to identify "functional units" | Panser et al., 2015 |
Interactive maps
| Resource | Description | Author/Source |
|---|---|---|
| FlyPNS | Description of embryonic and larval sensory organs of D. melanogaster in abdominal segments A1-A7 | Orgogozo and Grueber, 2005 |
| Embryonic and larval neuroblasts and lineages | Interactive maps of the embryonic and larval neuroblasts and lineages | Christof Rickert University of Mainz Mainz, Germany |
| Adult antennal lobe 3D model | 3D model of adult antennal lobe | Rybak et al., 2016 |
Nomenclature and protocols
| Resource | Description | Author/Source |
|---|---|---|
| BrainName | Standard nomenclature of the adult brain | Ito et al., 2014 |
| Immunostaining of adult brains | This protocol describes the dissection, staining, and imaging of adult brains from Drosophila with mosaic labeling | Ostrovsky et al., 2013 |
| Image registration of adult brains | This protocol describes the practical steps required for an intensity-based nonlinear registration of the Drosophila brain using the staining for the presynaptic marker Bruchpilot (nc82) | Ostrovsky et al., 2013 |
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