Difference between revisions of "FlyBase:Strain Report"
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|Name || The valid full name that is used in FlyBase for the strain. | |Name || The valid full name that is used in FlyBase for the strain. | ||
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| − | |Member of collection || | + | |Member of collection || The FlyBase symbol used for the dataset/collection; provides link to the complete dataset/collection report. |
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{| class="wikitable" style="width: 100%;" | {| class="wikitable" style="width: 100%;" | ||
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| − | | | + | |Phenotypic Class || style="width: 80%;" | A list of statements describing the overall phenotypic class of observed phenotype of the strain. |
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| + | Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is observed in the strain, e.g. visible, lethal, circadian rhythm defective. | ||
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| − | | | + | |Phenotype Manifest In || A list of the parts of the animal affected by the observed phenotype of the strain. These terms range from the entire animal to subcellular components and are often specific for a developmental stage. Body part and cell-type terms are from the Anatomy controlled vocabulary, while terms relating to parts of the cell are cellular component terms from the Gene Ontology controlled vocabulary. |
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{| class="wikitable" style="width: 100%;" | {| class="wikitable" style="width: 100%;" | ||
|- | |- | ||
| − | |Phenotypic Class || style="width: 80%;" | A list of statements describing the overall phenotypic class of the | + | |Phenotypic Class || style="width: 80%;" | A list of statements describing the overall phenotypic class of selected phenotype of the strain. |
| − | Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is | + | Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is selected in the strain, e.g. visible, lethal, circadian rhythm defective. |
|- | |- | ||
| − | |Phenotype Manifest In || A list of the parts of the animal affected by the | + | |Phenotype Manifest In || A list of the parts of the animal affected by the selected phenotype of the strain. These terms range from the entire animal to subcellular components and are often specific for a developmental stage. Body part and cell-type terms are from the Anatomy controlled vocabulary, while terms relating to parts of the cell are cellular component terms from the Gene Ontology controlled vocabulary. |
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{| class="wikitable" style="width: 100%;" | {| class="wikitable" style="width: 100%;" | ||
|- | |- | ||
| − | |Phenotypic Class || style="width: 80%;" | A list of statements describing the overall phenotypic class of the | + | |Phenotypic Class || style="width: 80%;" | A list of statements describing the overall phenotypic class of the quantitative trait being assayed. |
| − | Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is | + | Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is assayed in the strain, e.g. visible, lethal, circadian rhythm defective. |
|- | |- | ||
| − | |Phenotype Manifest In || A list of the parts of the animal affected by the | + | |Phenotype Manifest In || A list of the parts of the animal affected by the quantitative trait being assayed. These terms range from the entire animal to subcellular components and are often specific for a developmental stage. Body part and cell-type terms are from the Anatomy controlled vocabulary, while terms relating to parts of the cell are cellular component terms from the Gene Ontology controlled vocabulary. |
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{| class="wikitable" style="width: 100%;" | {| class="wikitable" style="width: 100%;" | ||
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| − | |Unassigned Phenotype Comments || style="width: 80%;" | | + | |Unassigned Phenotype Comments || style="width: 80%;" | Additional information in free-text format. |
|- | |- | ||
| − | |Selected Phenotype Comments || | + | |Selected Phenotype Comments || Additional information in free-text format. |
|- | |- | ||
| − | |General Phenotype Comments || | + | |General Phenotype Comments || Additional information in free-text format. |
|} | |} | ||
Revision as of 21:30, 11 December 2017
Last Updated: In progress
The Strain Report contains the information for an individual strain.
This is a field-by-field guide to the information provided in the Strain Report. FlyBase attributes data to the publication that reported it, so that users can easily refer back to the original publication if they wish. Thus, where possible in the fields below, the publication(s) that are the source of the information are listed, typically in parentheses to the right of the data.
General Information
| Symbol | The valid symbol that is used in FlyBase. |
| Species | The species of the strain, with the initial letter of the genus and the full species name listed. |
| Name | The valid full name that is used in FlyBase for the strain. |
| Member of collection | The FlyBase symbol used for the dataset/collection; provides link to the complete dataset/collection report. |
Genome Characterization
| Genome Sequence For | |
| Genome Accession | |
| Genome Assayed For | |
| Comments |
Defined Genetic Components
| Homozygous Allele(s) | |
| Heterozygous Allele(s) | |
| Homozygous Aberration(s) / Balancer(s) | |
| Heterozygous Aberration(s) / Balancer(s) | |
| Homozygous Insertion(s) |
Phenotypic Data (Undefined Genetic Components)
Phenotype Not Assigned to an Allele
| Phenotypic Class | A list of statements describing the overall phenotypic class of observed phenotype of the strain.
Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is observed in the strain, e.g. visible, lethal, circadian rhythm defective. |
| Phenotype Manifest In | A list of the parts of the animal affected by the observed phenotype of the strain. These terms range from the entire animal to subcellular components and are often specific for a developmental stage. Body part and cell-type terms are from the Anatomy controlled vocabulary, while terms relating to parts of the cell are cellular component terms from the Gene Ontology controlled vocabulary. |
Phenotype Subjected to Selection
| Phenotypic Class | A list of statements describing the overall phenotypic class of selected phenotype of the strain.
Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is selected in the strain, e.g. visible, lethal, circadian rhythm defective. |
| Phenotype Manifest In | A list of the parts of the animal affected by the selected phenotype of the strain. These terms range from the entire animal to subcellular components and are often specific for a developmental stage. Body part and cell-type terms are from the Anatomy controlled vocabulary, while terms relating to parts of the cell are cellular component terms from the Gene Ontology controlled vocabulary. |
Assayed for Quantitative Trait
| Phenotypic Class | A list of statements describing the overall phenotypic class of the quantitative trait being assayed.
Each statement contains a controlled vocabulary term from the phenotypic class section of the FlyBase controlled vocabulary that describes the class of phenotype that is assayed in the strain, e.g. visible, lethal, circadian rhythm defective. |
| Phenotype Manifest In | A list of the parts of the animal affected by the quantitative trait being assayed. These terms range from the entire animal to subcellular components and are often specific for a developmental stage. Body part and cell-type terms are from the Anatomy controlled vocabulary, while terms relating to parts of the cell are cellular component terms from the Gene Ontology controlled vocabulary. |
Phenotype Comments
| Unassigned Phenotype Comments | Additional information in free-text format. |
| Selected Phenotype Comments | Additional information in free-text format. |
| General Phenotype Comments | Additional information in free-text format. |
Origin and History
| Derived From Strain | |
| Member of Collection |
Natural Population Collection History
| Site, Country | |
| Site, State or Region | |
| Site, City or Place | |
| Site, Latitude | |
| Site, Longitude | |
| Collection Date | |
| Collection Season | |
| Collection Substrate | |
| Comments |
Introgressed Chromosomes
| Chromosome or segment |
Natural Transposons
| P-element Status | |
| hobo Status | |
| Comment |
Endosymbionts
| Organism & Assay Conclusion | |
| Comment |
Other Comments
Miscellaneous free text comments about the strain.
Stocks
A list of the stocks from the public Stock Centers that contain this strain; for each Stock Center, stock number and genotype are displayed. Clicking on the genotype will take you to the appropriate Stock Report.
References
A list of publications that discuss the strain, subdivided into fields by type of publication. Only fields containing data are displayed in an individual Strain Report.