Difference between revisions of "Help:State of the Wiki"

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* The MediaWiki free open source wiki software, the same software behind Wikipedia, has been installed and configured.
 
* The MediaWiki free open source wiki software, the same software behind Wikipedia, has been installed and configured.
* Several important extensions to the base MediaWiki software have been installed and configured.  
+
* Several important extensions to the base MediaWiki software have been installed and configured to enable greater functionality for wiki users.  
 +
*; WikiEditor
 +
*: This extension improves the user experience by adding a toolbar to help in editing wiki markup or wikitext.
 +
*; Cite
 +
*: This extension allows users to cite references and create a list of references.
 +
*; PubMed
 +
*: This extension pulls in literature data from scientific articles stored in PubMed
 
*; Semantic MediaWiki (SMW)
 
*; Semantic MediaWiki (SMW)
*: This extension lets you store and query data within the pages of the wiki.
+
*: This extension lets you store and query data within the pages of the wiki making the wiki a "collaborative database" in addition to a "collaborative book".
*: Simply, it makes the wiki a "collaborative database" in addition to a "collaborative encycylopedia".
+
*; Semantic Forms
*; WikiEditor
+
*: This extension allows you to have forms for adding, editing and querying data on your wiki, without any programming.
*: This extension improves the user experience by adding a toolbar to help in editing wiki markup.  
 
  
=== Seeding Data ===
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=== Seeding data ===
  
 
* 15 gene sample set
 
* 15 gene sample set

Revision as of 17:49, 10 August 2012

Done

Operating system

  • The Debian operating system has been installed on hardware good enough for group testing and initial deployment.
  • All dependencies necessary for the wiki software have been installed and configured (e.g. Apache HTTP server, MySQL database software, PHP scripting language, etc.).

Wiki software

  • The MediaWiki free open source wiki software, the same software behind Wikipedia, has been installed and configured.
  • Several important extensions to the base MediaWiki software have been installed and configured to enable greater functionality for wiki users.
    WikiEditor
    This extension improves the user experience by adding a toolbar to help in editing wiki markup or wikitext.
    Cite
    This extension allows users to cite references and create a list of references.
    PubMed
    This extension pulls in literature data from scientific articles stored in PubMed
    Semantic MediaWiki (SMW)
    This extension lets you store and query data within the pages of the wiki making the wiki a "collaborative database" in addition to a "collaborative book".
    Semantic Forms
    This extension allows you to have forms for adding, editing and querying data on your wiki, without any programming.

Seeding data

  • 15 gene sample set
  • alleles associated to sample set
  • references associated to sample set
  • FlyBase Bot loading scripts

Gene Summary Free Text

In progress

Alleles

References

Human disease

To-dos

Look and feel

Access control

  • Readers
  • writers
  • editors
  • administrators

Ontologies

Sync with FB after seeding / data flow

SPAM

Open ID

Legal