Difference between revisions of "FlyBase:Stocks"
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{|class="wikitable" | {|class="wikitable" | ||
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− | |style="text-align: center; padding: 15px;"| <big>[[FlyBase:External_Resources|All Resources]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:CRISPR|CRISPR]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:RNAi|RNAi]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase: | + | |style="text-align: center; padding: 15px;"| <big>[[FlyBase:External_Resources|All Resources]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:CRISPR|CRISPR]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Stocks|Stocks]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:RNAi|RNAi]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Model_Organism_Databases|Model Organism<br/> Databases]]</big> |
+ | |- | ||
+ | |style="text-align: center; padding: 20px;"| <big>[[FlyBase:Neuroscience|Neuroscience]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase: Antibodies|Antibodies]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Images|Images]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Maps|Maps]]</big> ||style="text-align: center; padding: 20px;"| <big>[http://www.flyrnai.org/tools/protocols/web/ Protocols]</big> | ||
|} | |} | ||
− | __TOC__ | + | __TOC__ |
= <em>D. melanogaster</em> Stock Collections = | = <em>D. melanogaster</em> Stock Collections = | ||
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!style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | !style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | ||
|- | |- | ||
− | |style="background: #efefef; white-space: nowrap;"| [ | + | |style="background: #efefef; white-space: nowrap;"| [https://bdsc.indiana.edu/ Bloomington Drosophila Stock Center (BDSC)] ||style="background: #efefef;"| A diverse collection of stocks useful for a wide range of research applications. ||style="background: #efefef;"| Bloomington Drosophila Stock Center (BDSC)<br/> Indiana University<br/> Bloomington, IN, USA |
|- | |- | ||
− | | [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi | + | |style="white-space: nowrap;"| [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto Stock Center] || The Kyoto Stock Center collects, maintains and distributes <em>Drosophila melanogaster</em> strains for research. ||style="white-space: nowrap;"| Kyoto Stock Center<br/> Kyoto Institute of Technology<br/> Kyoto, Japan |
|- | |- | ||
|style="background: #efefef;"| [https://drosophila.med.harvard.edu/ Exelixis] ||style="background: #efefef;"| The Exelixis Collection of transgenic insertion stocks at Harvard Medical School. ||style="background: #efefef;"| Harvard Medical School<br/> Boston, MA, USA | |style="background: #efefef;"| [https://drosophila.med.harvard.edu/ Exelixis] ||style="background: #efefef;"| The Exelixis Collection of transgenic insertion stocks at Harvard Medical School. ||style="background: #efefef;"| Harvard Medical School<br/> Boston, MA, USA | ||
|- | |- | ||
− | | [http://flyorf.ch/ FlyORF] || Well characterized transgenic UAS-ORF lines. Approximately 2,400 fly stocks comprising about 1900 genes, generated using the phiC31 integrase method. || FlyORF<br/> University of Zurich<br/> Zurich, Switzerland | + | |style="white-space: nowrap;"| [http://flyorf.ch/ FlyORF] || Well characterized transgenic UAS-ORF lines. Approximately 2,400 fly stocks comprising about 1900 genes, generated using the phiC31 integrase method. || FlyORF<br/> University of Zurich<br/> Zurich, Switzerland |
|- | |- | ||
|style="background: #efefef;"| [http://www.shigen.nig.ac.jp/fly/nigfly/ NIG-FLY] ||style="background: #efefef;"| NIG-RNAi stocks and TRiP Stocks for RNA interference experiments. ||style="background: #efefef;"| NIG-FLY<br/> National Institute of Genetics<br/> Mishima, Japan | |style="background: #efefef;"| [http://www.shigen.nig.ac.jp/fly/nigfly/ NIG-FLY] ||style="background: #efefef;"| NIG-RNAi stocks and TRiP Stocks for RNA interference experiments. ||style="background: #efefef;"| NIG-FLY<br/> National Institute of Genetics<br/> Mishima, Japan | ||
|- | |- | ||
− | | [http:// | + | | style="white-space: nowrap;"|[http://fly.redbux.cn/index.php?lang=en Tsinghua Fly Center (THFC)] || Transgenic RNAi fly lines. || THFC<br/> Tsinghua University<br/> Beijing, China |
|- | |- | ||
|style="background: #efefef;"| [http://stockcenter.vdrc.at/control/main VDRC, Vienna Drosophila RNAi Center] ||style="background: #efefef;"| Trangenic <em>Drosophila</em> RNAi libraries, a collection of enhancer-GAL4 driver lines, the Tagged FlyFos TransgeneOme (fTRG) library. ||style="background: #efefef;"| Vienna Drosophila Resource Center (VDRC)<br/> Vienna, Austria | |style="background: #efefef;"| [http://stockcenter.vdrc.at/control/main VDRC, Vienna Drosophila RNAi Center] ||style="background: #efefef;"| Trangenic <em>Drosophila</em> RNAi libraries, a collection of enhancer-GAL4 driver lines, the Tagged FlyFos TransgeneOme (fTRG) library. ||style="background: #efefef;"| Vienna Drosophila Resource Center (VDRC)<br/> Vienna, Austria | ||
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!style="background: #efefef;"| Stock Category !!style="background: #efefef;"| Availability | !style="background: #efefef;"| Stock Category !!style="background: #efefef;"| Availability | ||
|- | |- | ||
− | |style="background: #efefef; white-space: nowrap;"| Human Disease Models ||style="background: #efefef;"| [ | + | |style="background: #efefef; white-space: nowrap;"| Human Disease Models ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/hd/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/disease_ontology.html Kyoto] |
|- | |- | ||
− | |Deficiencies || [ | + | |Deficiencies || [https://bdsc.indiana.edu/stocks/df/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto] |
|- | |- | ||
− | |style="background: #efefef;"|Insertions ||style="background: #efefef;"|[ | + | |style="background: #efefef;"|Insertions ||style="background: #efefef;"|[https://bdsc.indiana.edu/stocks/in/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto], [https://drosophila.med.harvard.edu/ Harvard], [http://flypush.imgen.bcm.tmc.edu/pscreen/ GDP] |
|- | |- | ||
− | |Duplications || [ | + | |Duplications || [https://bdsc.indiana.edu/stocks/dp/index.html BDSC], [http://www.worldwidegenomics.com/duplication.html GenetiVision] |
|- | |- | ||
− | |style="background: #efefef;"|RNAi ||style="background: #efefef;"| [ | + | |style="background: #efefef;"|RNAi ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/rnai/index.html BDSC], [http://www.shigen.nig.ac.jp/fly/nigfly/ NIG-FLY], [http://stockcenter.vdrc.at/control/library_rnai VDRC], [http://www.med.tsinghua.edu.cn/index.php/en/administration/medical-school-notice/822-20150520 THFC] |
|- | |- | ||
− | |GAL4 || [ | + | |GAL4 || [https://bdsc.indiana.edu/stocks/gal4/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/GAL4.html Kyoto], [http://stockcenter.vdrc.at/control/library_vt VDRC], |
|- | |- | ||
− | |style="background: #efefef;"|UAS ||style="background: #efefef;"| [ | + | |style="background: #efefef;"|UAS ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/uas/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/UAS.html Kyoto], [http://flyorf.ch/ FlyOrf] |
|- | |- | ||
− | | | + | |Fluors || [https://bdsc.indiana.edu/stocks/gfp/index.html BDSC], [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto] |
|- | |- | ||
− | |style="background: #efefef;"|Tagged proteins under native control ||style="background: #efefef;"| | + | |style="background: #efefef;"|Tagged proteins under native control ||style="background: #efefef;"| [https://kyotofly.kit.jp/cgi-bin/stocks/index.cgi Kyoto], [http://stockcenter.vdrc.at/control/library_ftrg VDRC] |
|- | |- | ||
− | |CRISPR || [ | + | |CRISPR || [https://bdsc.indiana.edu/stocks/genome_editing/index.html BDSC], [http://www.shigen.nig.ac.jp/fly/nigfly/cas9ListAction.do NIG-FLY] |
|- | |- | ||
− | |style="background: #efefef;"|phiC31 ||style="background: #efefef;"|[ | + | |style="background: #efefef;"|phiC31 ||style="background: #efefef;"|[https://bdsc.indiana.edu/stocks/phic31/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/phiC31.html Kyoto] |
|- | |- | ||
− | |FRT || [ | + | |FLP/FRT || [https://bdsc.indiana.edu/stocks/recombinases/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/FRT.html Kyoto] |
|- | |- | ||
− | |style="background: #efefef;"|Balancers ||style="background: #efefef;"| [ | + | |style="background: #efefef;"|Balancers ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/balancers/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/Balancers.html Kyoto] |
|- | |- | ||
− | | | + | |Reference Genome strain (iso-1) || [https://bdsc.indiana.edu/Home/Search?presearch=2057 BDSC] |
|- | |- | ||
− | | | + | |Sequenced strains || [https://bdsc.indiana.edu/stocks/wt/dgrp.html BDSC] |
|- | |- | ||
− | |Non-<em>melanogaster</em> <em>Drosophila</em> species || | + | |style="background: #efefef;"|Wildtype stocks ||style="background: #efefef;"| [https://bdsc.indiana.edu/stocks/wt/index.html BDSC], [http://kyotofly.kit.jp/stocks/documents/Wild_type_stocks.html Kyoto] |
+ | |- | ||
+ | |Non-<em>melanogaster</em> <em>Drosophila</em> species || [https://stockcenter.ucsd.edu/index.php?table=Species&sort=location+desc DSSC], [https://kyotofly.kit.jp/cgi-bin/ehime/photo_data_list.cgi EHIME-Fly], [http://www.shigen.nig.ac.jp/fly/kyorin/cgi-bin/index.cgi KYORIN-Fly] | ||
|- | |- | ||
|} | |} | ||
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!style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | !style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | ||
|- | |- | ||
− | |style="background: #efefef;"| [http://www.crisprflydesign.org/flies/ CRISPR fly design] ||style="background: #efefef;"| Details of a set of Cas9 transgenic <em>D. melanogaster</em> lines [ | + | |style="background: #efefef;"| [http://www.crisprflydesign.org/flies/ CRISPR fly design] ||style="background: #efefef;"| Details of a set of Cas9 transgenic <em>D. melanogaster</em> lines [https://bdsc.indiana.edu/stocks/genome_editing/crispr_cas9.html available at the BDSC]. ||style="background: #efefef;"| MRC Laboratory of Molecular Biology<br /> Cambridge, UK |
+ | |- | ||
+ | | [http://www.drosdel.org.uk/ DrosDel: An isogenic deficiency kit for Drosophila melanogaster]|| Information about isogenic deficiency lines generated by the DrosDel Project. || University of Cambridge<br/> Cambridge, UK | ||
+ | |- | ||
+ | |style="background: #efefef;"| [https://www.hgsc.bcm.edu/arthropods/drosophila-genetic-reference-panel Drosophila Genetic Reference Panel (DGRP)] ||style="background: #efefef;"| Details regarding the DGRP lines [http://flystocks.bio.indiana.edu/Browse/DGRP.php available at the BDSC]. Includes a general summary and links to informative websites and references. ||style="white-space: nowrap; background: #efefef;"| Human Genome Sequencing Center<br/> Baylor College of Medicine<br/> Houston, TX, USA | ||
|- | |- | ||
− | | [http://www. | + | | [http://www.ehime-u.ac.jp/~scibio/evolut/DSEU_photo/ Ehime University fly species photographs] || Photographs of 102 species of <em>Drosophila</em> stocks at Ehime University. || Ehime University<br/> Matsuyama, Ehime, Japan |
|- | |- | ||
|style="background: #efefef;"| [http://cooley.medicine.yale.edu/flytrap/ Flytrap Project] ||style="background: #efefef;"| Information about GFP protein trap lines from the FlyTrap project. ||style="background: #efefef;"| Yale University<br/> New Haven, CT, USA | |style="background: #efefef;"| [http://cooley.medicine.yale.edu/flytrap/ Flytrap Project] ||style="background: #efefef;"| Information about GFP protein trap lines from the FlyTrap project. ||style="background: #efefef;"| Yale University<br/> New Haven, CT, USA | ||
|- | |- | ||
− | | [http://flypush.imgen.bcm.tmc.edu/pscreen/ Gene Disruption Project] || Information about insertion lines produced by the Gene Disruption Project (GDP). || Baylor College of Medicine<br/> Houston, TX, USA | + | | [http://flypush.imgen.bcm.tmc.edu/pscreen/ Gene Disruption Project (GDP)] || Information about insertion lines produced by the Gene Disruption Project (GDP). || Baylor College of Medicine<br/> Houston, TX, USA |
|- | |- | ||
− | |style="background: #efefef;"| [http://flypush.imgen.bcm.tmc.edu/pscreen/rmce/ GDP MiMIC RMCE Lines] ||style="background: #efefef; | + | |style="background: #efefef;"| [http://flypush.imgen.bcm.tmc.edu/pscreen/rmce/ GDP MiMIC RMCE Lines] ||style="background: #efefef;| Information about MiMIC RMCE Lines from the Gene Disruption Project. ||style="background: #efefef;| Baylor College of Medicine<br/> Houston, TX, USA |
|- | |- | ||
| [http://flypush.imgen.bcm.tmc.edu/pscreen/transposons.html GDP Transposon Schematics] || Schematic illustrations of transposons featured in the Gene Disruption Project database. || Baylor College of Medicine<br/> Houston, TX, USA | | [http://flypush.imgen.bcm.tmc.edu/pscreen/transposons.html GDP Transposon Schematics] || Schematic illustrations of transposons featured in the Gene Disruption Project database. || Baylor College of Medicine<br/> Houston, TX, USA | ||
|- | |- | ||
− | + | |style="background: #efefef;"| [https://www.janelia.org/project-team/flylight Janelia FlyLight Project] ||style="background: #efefef;| Large anatomical data sets and highly characterized collections of GAL4, LexA and Split-GAL4 drivers to enable the visualization and precise manipulation of individual cell types in the adult and larval <em>Drosophila</em> nervous systems. Stocks are [http://flystocks.bio.indiana.edu/Browse/gal4/gal4_Janelia.php available at the BDSC]. ||style="background: #efefef;| Janelia Research Campus<br/> Ashburn, VA, USA | |
− | |||
− | |||
− | |||
− | |style="background: #efefef;"| [https://www.janelia.org/project-team/flylight Janelia FlyLight Project] ||style="background: #efefef; | ||
|} | |} | ||
<br/> | <br/> | ||
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!style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | !style="background: #efefef;"| Resource !!style="background: #efefef;"| Description !!style="background: #efefef;"| Author/Source | ||
|- | |- | ||
− | |style="background: #efefef; white-space: nowrap;"| [https://kyotofly.kit | + | |style="background: #efefef; white-space: nowrap;"| [https://kyotofly.kit.jp/cgi-bin/ehime/photo_data_list.cgi EHIME-Fly]||style="background: #efefef;"| Wild type stocks of <em>Drosophila</em> species that have been recorded in Japan. EHIME-Fly maintains and distributes over 130 species, represented by approximately 1450 stocks. ||style="background: #efefef; white-space: nowrap;"| Ehime University<br/> Matsuyama, Ehime, Japan |
|- | |- | ||
− | | [ | + | | [http://blogs.cornell.edu/drosophila/ NDSSC, National Drosophila Species Stock Center] || The DSSC maintains a living collection of over 250 <em>Drosophila</em> species represented by approximately 1090 stocks. || Cornell University<br/> Ithaca, NY, USA |
|- | |- | ||
|style="background: #efefef; white-space: nowrap;"| [http://www.shigen.nig.ac.jp/fly/kyorin/cgi-bin/index.cgi KYORIN-Fly ] ||style="background: #efefef;"| Mutant and wild type stocks of <em>Drosophila</em> species, especially the <em>Drosophila ananassae</em> species subgroup, <em>D. auraria complex</em>, and <em>D. hydei</em>. ||style="background: #efefef;"| Kyorin University<br/> Shinkawa, Mitaka, Tokyo, Japan | |style="background: #efefef; white-space: nowrap;"| [http://www.shigen.nig.ac.jp/fly/kyorin/cgi-bin/index.cgi KYORIN-Fly ] ||style="background: #efefef;"| Mutant and wild type stocks of <em>Drosophila</em> species, especially the <em>Drosophila ananassae</em> species subgroup, <em>D. auraria complex</em>, and <em>D. hydei</em>. ||style="background: #efefef;"| Kyorin University<br/> Shinkawa, Mitaka, Tokyo, Japan |
Revision as of 17:38, 3 January 2019
Popular Resource Categories
All Resources | CRISPR | Stocks | RNAi | Model Organism Databases |
Neuroscience | Antibodies | Images | Maps | Protocols |
D. melanogaster Stock Collections
Resource | Description | Author/Source |
---|---|---|
Bloomington Drosophila Stock Center (BDSC) | A diverse collection of stocks useful for a wide range of research applications. | Bloomington Drosophila Stock Center (BDSC) Indiana University Bloomington, IN, USA |
Kyoto Stock Center | The Kyoto Stock Center collects, maintains and distributes Drosophila melanogaster strains for research. | Kyoto Stock Center Kyoto Institute of Technology Kyoto, Japan |
Exelixis | The Exelixis Collection of transgenic insertion stocks at Harvard Medical School. | Harvard Medical School Boston, MA, USA |
FlyORF | Well characterized transgenic UAS-ORF lines. Approximately 2,400 fly stocks comprising about 1900 genes, generated using the phiC31 integrase method. | FlyORF University of Zurich Zurich, Switzerland |
NIG-FLY | NIG-RNAi stocks and TRiP Stocks for RNA interference experiments. | NIG-FLY National Institute of Genetics Mishima, Japan |
Tsinghua Fly Center (THFC) | Transgenic RNAi fly lines. | THFC Tsinghua University Beijing, China |
VDRC, Vienna Drosophila RNAi Center | Trangenic Drosophila RNAi libraries, a collection of enhancer-GAL4 driver lines, the Tagged FlyFos TransgeneOme (fTRG) library. | Vienna Drosophila Resource Center (VDRC) Vienna, Austria |
D. melanogaster Stock Collections by Specific Category
Stock Category | Availability |
---|---|
Human Disease Models | BDSC, Kyoto |
Deficiencies | BDSC, Kyoto |
Insertions | BDSC, Kyoto, Harvard, GDP |
Duplications | BDSC, GenetiVision |
RNAi | BDSC, NIG-FLY, VDRC, THFC |
GAL4 | BDSC, Kyoto, VDRC, |
UAS | BDSC, Kyoto, FlyOrf |
Fluors | BDSC, Kyoto |
Tagged proteins under native control | Kyoto, VDRC |
CRISPR | BDSC, NIG-FLY |
phiC31 | BDSC, Kyoto |
FLP/FRT | BDSC, Kyoto |
Balancers | BDSC, Kyoto |
Reference Genome strain (iso-1) | BDSC |
Sequenced strains | BDSC |
Wildtype stocks | BDSC, Kyoto |
Non-melanogaster Drosophila species | DSSC, EHIME-Fly, KYORIN-Fly |
D. melanogaster Stock Collection Informational Sites
Resource | Description | Author/Source |
---|---|---|
CRISPR fly design | Details of a set of Cas9 transgenic D. melanogaster lines available at the BDSC. | MRC Laboratory of Molecular Biology Cambridge, UK |
DrosDel: An isogenic deficiency kit for Drosophila melanogaster | Information about isogenic deficiency lines generated by the DrosDel Project. | University of Cambridge Cambridge, UK |
Drosophila Genetic Reference Panel (DGRP) | Details regarding the DGRP lines available at the BDSC. Includes a general summary and links to informative websites and references. | Human Genome Sequencing Center Baylor College of Medicine Houston, TX, USA |
Ehime University fly species photographs | Photographs of 102 species of Drosophila stocks at Ehime University. | Ehime University Matsuyama, Ehime, Japan |
Flytrap Project | Information about GFP protein trap lines from the FlyTrap project. | Yale University New Haven, CT, USA |
Gene Disruption Project (GDP) | Information about insertion lines produced by the Gene Disruption Project (GDP). | Baylor College of Medicine Houston, TX, USA |
GDP MiMIC RMCE Lines | Information about MiMIC RMCE Lines from the Gene Disruption Project. | Baylor College of Medicine Houston, TX, USA |
GDP Transposon Schematics | Schematic illustrations of transposons featured in the Gene Disruption Project database. | Baylor College of Medicine Houston, TX, USA |
Janelia FlyLight Project | Large anatomical data sets and highly characterized collections of GAL4, LexA and Split-GAL4 drivers to enable the visualization and precise manipulation of individual cell types in the adult and larval Drosophila nervous systems. Stocks are available at the BDSC. | Janelia Research Campus Ashburn, VA, USA |
Drosophila Species Collections
Resource | Description | Author/Source |
---|---|---|
EHIME-Fly | Wild type stocks of Drosophila species that have been recorded in Japan. EHIME-Fly maintains and distributes over 130 species, represented by approximately 1450 stocks. | Ehime University Matsuyama, Ehime, Japan |
NDSSC, National Drosophila Species Stock Center | The DSSC maintains a living collection of over 250 Drosophila species represented by approximately 1090 stocks. | Cornell University Ithaca, NY, USA |
KYORIN-Fly | Mutant and wild type stocks of Drosophila species, especially the Drosophila ananassae species subgroup, D. auraria complex, and D. hydei. | Kyorin University Shinkawa, Mitaka, Tokyo, Japan |
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