Difference between revisions of "FlyBase:Reference Manual F. Links to and from FlyBase"

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[http://microrna.sanger.ac.uk/sequences/index.shtml miRBase] - microRNA data
 
[http://microrna.sanger.ac.uk/sequences/index.shtml miRBase] - microRNA data
  
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[http://mitodrome.ba.itb.cnr.it/ MitoDrome] - MitoDrome
  
 
PDB - Protein Data Bank (Brookhaven)
 
PDB - Protein Data Bank (Brookhaven)

Revision as of 18:08, 10 February 2014

FlyBase provides stable links to FlyBase for use by other databases, and links to other databases from FlyBase. Links to FlyBase data items, and links between data items in FlyBase and other databases are described in the sections that follow. Drosophila Resources includes a linked list of additional databases likely to be of interest to users of FlyBase.

FlyBase-curated links

These are accession numbers that are incorporated into the FlyBase database, for sequence and certain other molecular data, and for reference data.

Linkouts

These links derive from linking tables that are maintained and provided to FlyBase by the external database. Linkouts are combined with FlyBase data for reporting on FlyBase web pages.

F.2.1. FlyBase-curated links

FlyBase-curated links

Accession numbers from the following databases are currently incorporated into FlyBase records as FlyBase-curated links:

DDBJ/EMBL/GenBank - the nucleic acid sequence databases of Japan, the U.S., and Europe

EPD - Eukaryotic Promoter Database (Bucher)

GPCRDB - The G protein-coupled receptor database

InterPro - a database of protein families, domains and functional sites

MEROPS - Protease database MEROPS - Protease database miRBase - microRNA data


MitoDrome - MitoDrome

PDB - Protein Data Bank (Brookhaven)

PubMed - biomedical literature citations and abstracts

Rfam - RNA families database of alignments and CMs

TRANSFAC - A database of transcription factors and their binding sites

UniProtKB/Swiss-Prot - UniProt Knowledgebase, Swiss-Prot section

UniProtKB/TrEMBL - UniProt Knowledgebase, TrEMBL section

F.2.2. FlyBase linkouts