Difference between revisions of "FlyBase:Reference Manual F. Links to and from FlyBase"
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These links derive from linking tables that are maintained and provided to FlyBase by the external database. Linkouts are combined with FlyBase data for reporting on FlyBase web pages. | These links derive from linking tables that are maintained and provided to FlyBase by the external database. Linkouts are combined with FlyBase data for reporting on FlyBase web pages. | ||
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==F.2.1. FlyBase-curated links== | ==F.2.1. FlyBase-curated links== | ||
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| + | ==FlyBase-curated links== | ||
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Accession numbers from the following databases are currently incorporated into FlyBase records as FlyBase-curated links: | Accession numbers from the following databases are currently incorporated into FlyBase records as FlyBase-curated links: | ||
| − | DDBJ/EMBL/GenBank - the nucleic acid sequence databases of Japan, the U.S., and Europe | + | [http://www.ddbj.nig.ac.jp/ DDBJ]/[http://www.ebi.ac.uk/embl/ EMBL]/[http://www.ncbi.nlm.nih.gov/Genbank/ GenBank] - the nucleic acid sequence databases of Japan, the U.S., and Europe |
| − | EPD - Eukaryotic Promoter Database (Bucher) | + | |
| − | GPCRDB - The G protein-coupled receptor database | + | [http://www.epd.isb-sib.ch/ EPD] - Eukaryotic Promoter Database (Bucher) |
| − | InterPro - a database of protein families, domains and functional sites | + | |
| − | MEROPS - Protease database | + | [http://www.gpcr.org/7tm/ GPCRDB] - The G protein-coupled receptor database |
| − | miRBase - microRNA data | + | |
| − | MitoDrome - | + | [http://www.ebi.ac.uk/interpro/ InterPro] - a database of protein families, domains and functional sites |
| − | PDB - Protein Data Bank (Brookhaven) | + | |
| − | PubMed - biomedical literature citations and abstracts | + | [http://merops.sanger.ac.uk/ MEROPS] - Protease database |
| + | [http://merops.sanger.ac.uk/ MEROPS] - Protease database | ||
| + | [http://microrna.sanger.ac.uk/sequences/index.shtml miRBase] - microRNA data | ||
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| + | [http://mitodrome.ba.itb.cnr.it/ MitoDrome] - MitoDrome | ||
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| + | [http://www.rcsb.org/pdb/home/home.do PDB] - Protein Data Bank (Brookhaven) | ||
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| + | [http://www.ncbi.nlm.nih.gov/pubmed PubMed] - biomedical literature citations and abstracts | ||
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Rfam - RNA families database of alignments and CMs | Rfam - RNA families database of alignments and CMs | ||
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TRANSFAC - A database of transcription factors and their binding sites | TRANSFAC - A database of transcription factors and their binding sites | ||
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UniProtKB/Swiss-Prot - UniProt Knowledgebase, Swiss-Prot section | UniProtKB/Swiss-Prot - UniProt Knowledgebase, Swiss-Prot section | ||
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UniProtKB/TrEMBL - UniProt Knowledgebase, TrEMBL section | UniProtKB/TrEMBL - UniProt Knowledgebase, TrEMBL section | ||
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==F.2.2. FlyBase linkouts== | ==F.2.2. FlyBase linkouts== | ||
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Latest revision as of 18:40, 10 February 2014
FlyBase provides stable links to FlyBase for use by other databases, and links to other databases from FlyBase. Links to FlyBase data items, and links between data items in FlyBase and other databases are described in the sections that follow. Drosophila Resources includes a linked list of additional databases likely to be of interest to users of FlyBase.
FlyBase-curated links
These are accession numbers that are incorporated into the FlyBase database, for sequence and certain other molecular data, and for reference data.
Linkouts
These links derive from linking tables that are maintained and provided to FlyBase by the external database. Linkouts are combined with FlyBase data for reporting on FlyBase web pages.
F.2.1. FlyBase-curated links
FlyBase-curated links
Accession numbers from the following databases are currently incorporated into FlyBase records as FlyBase-curated links:
DDBJ/EMBL/GenBank - the nucleic acid sequence databases of Japan, the U.S., and Europe
EPD - Eukaryotic Promoter Database (Bucher)
GPCRDB - The G protein-coupled receptor database
InterPro - a database of protein families, domains and functional sites
MEROPS - Protease database MEROPS - Protease database miRBase - microRNA data
MitoDrome - MitoDrome
PDB - Protein Data Bank (Brookhaven)
PubMed - biomedical literature citations and abstracts
Rfam - RNA families database of alignments and CMs
TRANSFAC - A database of transcription factors and their binding sites
UniProtKB/Swiss-Prot - UniProt Knowledgebase, Swiss-Prot section
UniProtKB/TrEMBL - UniProt Knowledgebase, TrEMBL section