FlyBase:Neuroscience

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Neuroscience

Databases of expression, anatomy and physiology

Resource	Description	Author/Source
BrainBase	Database of images and annotations of expression for VT and enhancer trap GAL4 lines	Barry Dickson Lab formerly at Institute of Molecular Pathology Vienna, Austria Biomedical Visualization Group VRVis Vienna, Austria
BrainTrap	Database with expression of protein trap lines in the adult brain	Knowles-Barley et al., 2010
FlyBrain Neuron NDB	Database of neuron, strain, antibody and brain regions data.	Laboratory of Structural Information Institute of Molecular and Cellular Biosciences The University of Tokyo Tokyo, Japan
FlyCircuit	Database for online archiving, cell type inventory, browsing, searching, analysis and 3D visualization of individual neuron images in the adult brain	Chiang et al., 2011
FlyLight GAL4 lines	Database of expression patterns of GAL4 and LexA driver lines from Janelia Research Campus	Janelia FlyLight Project Team Gerry Rubin Lab James Truman Lab Richard Mann Lab Chris Doe Lab Janelia Research Campus Virginia, USA
FlyLight Split GAL4 lines	Database of expression patterns of Split GAL4 lines from Janelia Research Campus	Janelia FlyLight Project Team Gerry Rubin Lab Janelia Research Campus Virginia, USA
Fly Trap	Database of classical P(GAL4) enhancer traps imaged in head sections	Armstrong Lab University of Edinburgh Edinburgh, UK
DoOR	Database of odorant responses in Drosophila	Munch and Galizia, 2016
NeuroMorpho	Curated inventory of digitally reconstructed neurons associated with peer-reviewed publications	Ascoli et al., 2007
Insect Brain Database	Database of single neurons and brains for several insect species	Uwe Homberg Lab Randolf Menzel Lab Marie Dacke/Basil el Jundi Labs Bente Berg Lab Stanley Heinze Lab

For viewing, analysing and querying images

Resource	Description	Author/Source
Virtual Fly Brain	Interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of Drosophila melanogaster	Milyaev et al., 2012
BrainGazer	Desktop interactive tool for advanced visualization and exploration of neural circuit data	Bruckner et al., 2009
NBLAST	Tool to search for similar neurons by morphology and location	Costa et al., 2014
Bridging registrations	This site provides the tools to transform image data from one template brain (adult Drosophila) to another, using a bridging registration.	Manton et al., 2014
Braincode	Automated segmentation of the Drosophila brain to identify "functional units"	Panser et al., 2015

Interactive maps

Resource	Description	Author/Source
FlyPNS	Description of embryonic and larval sensory organs of D. melanogaster that are located in abdominal segments A1-A7	Orgogozo and Grueber, 2005
Embryonic and larval neuroblasts and lineages	Interactive maps of the embryonic and larval neuroblasts and lineages	Christof Rickert University of Mainz Mainz, Germany
Adult antennal lobe 3D model	3D model of adult antennal lobe	Rybak et al., 2016

Nomenclature and protocols

Resource	Description	Author/Source
BrainName	Standard nomenclature of the adult brain	Ito et al., 2014
Immunostaining of adult brains	This protocol describes the dissection, staining, and imaging of adult brains from Drosophila with mosaic labeling	Ostrovsky et al., 2013
Image registration of adult brains	This protocol describes the practical steps required for an intensity-based nonlinear registration of the Drosophila brain using the staining for the presynaptic marker Bruchpilot (nc82)	Ostrovsky et al., 2013

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