Difference between revisions of "FlyBase:Help"

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====Tools====
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__TOC__
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=FlyBase Help=
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==[[FlyBase:FlyBase Help Index | FlyBase Help Index]]==
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==Tools==
 
* [[FlyBase:Tools Overview|Tools Overview]]
 
* [[FlyBase:Tools Overview|Tools Overview]]
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* [[FlyBase:GBrowse|FlyBase GBrowse Help]]
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* [[FlyBase:JBrowse|FlyBase JBrowse Help]]
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* [[FlyBase:GBrowse Tracks|GBrowse Tracks]]
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* [[FlyBase:JBrowse Tracks|JBrowse Tracks]]
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* [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]]
  
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====Downloads====
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==Downloads==
 
* [[FlyBase:Downloads Overview|Downloads Overview]]
 
* [[FlyBase:Downloads Overview|Downloads Overview]]
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* [http://{{SERVERNAME}}/static_pages/downloads/bulkdata7.html Precomputed data files for the current release]
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=bulkdata7.html&title=Current%20Release Precomputed data files for the current release]
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* [http://{{SERVERNAME}}/static_pages/downloads/archivedata3.html Archived data files for recent releases]
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=archivedata3.html&title=Archived%20Releases Archived data files for recent releases]
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* [http://{{SERVERNAME}}/static_pages/downloads/current/map_conversion/cyto-genetic-seq.tsv Map Conversion]
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* [[Media:DmelMapTable.160615c.xlsx | Map conversion]]
 
:'''FTP site'''
 
:'''FTP site'''
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::*[ftp://ftp.flybase.net/releases/ Index of releases]
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::*[ftp://ftp.flybase.org/releases/ Index of releases]
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::*[ftp://ftp.flybase.net/genomes/ Index of Genomes]
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::*[ftp://ftp.flybase.org/genomes/ Index of Genomes]
  
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====Links====
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==External Resource Links==
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* [[FlyBase:All Resources|All Resources]]
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* [[FlyBase:External Resources|All External Resources]]
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** [[FlyBase:Drosophila Network Resources|Drosophila Network Resources]]
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** [[FlyBase:Drosophila Network Resources| Curated list of Drosophila Online Resources]]
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** [[FlyBase:Drosophila Material Resources|Drosophila Material Resouces (Reagents)]]
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** [[FlyBase:Drosophila Material Resources|Curated list of Drosophila Material Resources (Reagents)]]
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* [[FlyBase:Model Organism Databases|Model Organism Databases]]
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** [[FlyBase:CRISPR|CRISPR links page]]
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* [[FlyBase:Stock Collections|Stock Collections]]
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** [[FlyBase:ScRNA-Seq|ScRNA-Seq links page]]
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*[[FlyBase:Funding|Funding]]
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** [[FlyBase:RNAi|RNAi links page]]
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*[http://www.fruitfly.org/ BDGP]
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** [[FlyBase:Stocks|Stocks links page]]
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*[https://dgrc.cgb.indiana.edu/Home DGRC]
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** [[FlyBase:Antibodies|Antibodies links page]]
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*[http://www.ou.edu/journals/dis/byissue.html DIS by Issue]
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** [[FlyBase:Neuroscience|Neuroscience links page]]
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*[http://www.flyexpress.net/ FlyExpress]
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** [[FlyBase:Model Organism Databases|Model Organism Databases links page]]
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*[http://www.sdbonline.org/sites/fly/aimain/1aahome.htm Interactive Fly]
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** [[FlyBase:Images|Images links page]]
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*[http://www.modencode.org/ modENCODE]
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** [[FlyBase:Maps|Maps links page]]
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*[http://www.textpresso.org/fly/ Textpresso for Fly]
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** [http://www.flyrnai.org/tools/protocols/web/| DRSC Protocols page]
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** [[FlyBase:Papers with technical advances|Papers with technical advances links page]]
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** [[FlyBase:GSEA|Gene Set Enrichment Tools links page]]
  
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====Community====
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==Community==
  
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* [http://{{SERVERNAME}}/submission/publication/ Fast Track Your Paper]
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* [http://flybase.org/submission/publication/ Fast Track Your Paper]
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* [[FlyBase:Fly Lab List| Fly Lab List]]
 
* [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]]
 
* [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]]
 
* [https://groups.google.com/forum/#!forum/flybase FlyBase Forum]
 
* [https://groups.google.com/forum/#!forum/flybase FlyBase Forum]
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* [http://{{SERVERNAME}}/static_pages/people/people_query6.html Find A Person]
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* [https://flybase.org/community/newsletter FlyBase Newsletter]
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* [http://{{SERVERNAME}}/static_pages/news/newsletter.html Newsletter]
 
 
* [http://www.bio.net/hypermail/dros/ bionet.dros]
 
* [http://www.bio.net/hypermail/dros/ bionet.dros]
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* [http://{{SERVERNAME}}/wiki/Category:Genes FlyGene Wiki]
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* [[FlyBase:Fly Board| Fly Board]]
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* [[FlyBase:NIH Funding| NIH Funding]]
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* [https://flyslackco.slack.com/ FlySlack]
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* [[FlyBase:Gene_Snapshots| Gene Snapshots]]
 
* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)]
 
* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)]
  
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====Species====
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==Species==
 
* [[FlyBase:Phylogeny|Phylogeny]]
 
* [[FlyBase:Phylogeny|Phylogeny]]
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* [http://{{SERVERNAME}}/static_pages/species/sequenced_species.html Sequenced Species]
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* [http://flybase.org/static/sequenced_species Original 12 Sequenced Drosophila Species]
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* [http://{{SERVERNAME}}/maps/chromosomes/synteny_table.html Synteny Table]
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* [http://flybase.org/maps/synteny Synteny Table for Original 12 Sequenced Drosophila Species]
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* [http://{{SERVERNAME}}/static_pages/anatomy/Drosophilidae/Drosophilidae.html Color Illustrations]
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* [http://flybase.org/static/Drosophilidae Color Illustrations of more than 100 Drosophila Species]
 
* [[FlyBase:Abbreviations|Abbreviations]]
 
* [[FlyBase:Abbreviations|Abbreviations]]
  
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====About====
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==About FlyBase==
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=release_notes.html&title=Release%20Notes Release Notes]
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* [http://{{SERVERNAME}}/static_pages/docs/release_notes.html Release Notes]
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* [http://flybase.org/static/new-this-release New in Release]
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* [http://{{SERVERNAME}}/static_pages/docs/new_this_release.html New in Release]
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* [http://flybase.org/static/release_schedule Release Schedule]
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* [http://{{SERVERNAME}}/static_pages/docs/release_schedule.html Release Schedule]
 
 
* [[FlyBase:FlyBase Positions| FlyBase Positions]]
 
* [[FlyBase:FlyBase Positions| FlyBase Positions]]
 
* [[FlyBase:About#Citing_FlyBase| Citing FlyBase]]
 
* [[FlyBase:About#Citing_FlyBase| Citing FlyBase]]
 
* [[FlyBase:About#FlyBase_Consortium| FlyBase Consortium]]
 
* [[FlyBase:About#FlyBase_Consortium| FlyBase Consortium]]
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* [[FlyBase:Overview| FlyBase Overview]]
 
* [[FlyBase:About#FlyBase_Publications| FlyBase Publications]]
 
* [[FlyBase:About#FlyBase_Publications| FlyBase Publications]]
 
* [[FlyBase:About#FlyBase_Support| FlyBase Support]]
 
* [[FlyBase:About#FlyBase_Support| FlyBase Support]]
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* [[FlyBase:FlyBase Website Access Fee FAQ| FlyBase Website Access Fee FAQ]]
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==Help==
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* [[FlyBase:New to Flies?|Useful links if you are new to Flies]]
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* [https://wiki.flybase.org/wiki/FlyBase:Tweetorial FlyBase Tweetorials]
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* [https://www.youtube.com/channel/UCG-KSNq46vkezAwbrVQojYA/videos FlyBase Video Tutorials]
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* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
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* [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]]
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* [[FlyBase:Author Guidelines|Author Guidelines]]
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* [[FlyBase:Personal communications to FlyBase|Personal communications to FlyBase]]
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* [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase pamphlets, powerpoints and posters]]
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* [https://flybase.org/contact/email Contact FlyBase]
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* [[FlyBase:Vectors and Constructs|Commonly used vectors and constructs]]
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* [[FlyBase:FAQ|FAQs]]
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==FlyBase Report Help==
  
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====Help====
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'''FlyBase Report Help and Documentation'''
  
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* [[FlyBase:FAQ|FAQs]]
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* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
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* [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase Guides: Pamphlets and Powerpoints]]
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* [https://www.youtube.com/user/FlyBaseDB Video Tutorials]
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==Documentation==
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* [[FlyBase:Report Help|Report Help]]
 
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* [[FlyBase:Author Guidelines|Author Guidelines]]
 
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* [http://{{SERVERNAME}}/cgi-bin/mailto-fbhelp.html Contact FlyBase]
 
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* [[FlyBase:New to Flies?|New to Flies?]]
 
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* [http://{{SERVERNAME}}/static_pages/search/site_search.html Google<sup>TM</sup> FlyBase]
 
  
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:'''Documentation'''
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'''Nomenclature'''
  
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::'''Curation'''
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*[[FlyBase:Nomenclature|Nomenclature Guidelines]]
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*[[FlyBase:Nontraditional alleles |Nontraditional alleles]]
  
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:::* [[FlyBase:Controlled vocabularies used by FlyBase |Controlled Vocabularies used by FlyBase]]
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'''Gene Model Annotation'''
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:::* [[FlyBase:Nontraditional alleles |Nontraditional alleles]]
 
  
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::'''Gene Model Annotation'''
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*[[FlyBase:Gene Model Annotation Guidelines|Gene Model Annotation Guidelines (2012)]]
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*[[FlyBase:Gene_Model_Annotation_Guidelines#G.7._Gene_Model_Annotation_Guidelines_.282007.29|Gene Model Annotation Guidelines (2007)]]
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*[[FlyBase:Annotation Evidence Score|What does the annotation evidence score mean?]]
  
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:::* [[FlyBase:Gene Model Annotation Guidelines|Gene Model Annotation Guidelines (2012)]]
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'''GO Annotation'''
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:::* [[FlyBase:Gene_Model_Annotation_Guidelines#G.7._Gene_Model_Annotation_Guidelines_.282007.29|Gene Model Annotation Guidelines (2007)]]
 
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:::* [[FlyBase:Annotation Evidence Score|What does the annotation evidence score mean?]]
 
  
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::'''GO Annotation'''
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*[[FlyBase:Gene Ontology (GO) Annotation |Classification of Gene Products using Gene Ontology (GO) terms]]
  
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:::* [[FlyBase:Gene Ontology (GO) Annotation |Classification of Gene Products using Gene Ontology (GO) terms]]
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'''Computed Fields'''
  
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::* [[FlyBase:Nomenclature|Nomenclature]]
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*[[FlyBase:Computed Feature type of genes | Computed Feature type of genes]]
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*[[FlyBase:Computed cytological data | Computed cytological data]]
  
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::* [[FlyBase:Vectors and Constructs|Vectors and Constructs]]
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'''Links to and from FlyBase'''
  
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::'''Computed Fields'''
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*[[FlyBase:RefMan F.|Instructions for creating links to and from FlyBase]]
  
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:::* [[FlyBase:Computed Feature type of genes | Computed Feature type of genes]]
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==General==
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:::* [[FlyBase:Computed cytological data | Computed cytological data]]
 
  
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::* [[FlyBase:Personal communications to FlyBase |Personal communications to FlyBase]]
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* [[FlyBase:Fly Board|Fly Board and White Papers]]
  
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::* [[FlyBase:RefMan F.|Links to and from FlyBase]]
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[[Category:Help]]
  
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====News====
 
  
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* [[FlyBase:FlyBase News|FlyBase News]]
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==Tools for Archived Instances of FlyBase==
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* [[FlyBase:Meetings|Meetings]]
 
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* [[FlyBase:Courses|Courses]]
 
  
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====General====
 
  
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* [[FlyBase:Zotero support in FlyBase|Zotero support in FlyBase]]
 
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* [[FlyBase:Fly Board|Fly Board and White Papers]]
 
  
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{| class="wikitable" style="text-align: center; color: red; margin: auto;"
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!colspan="1"|Warning
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|-
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|rowspan="1"|Information about GBrowse is only relevant to users of an [http://flybase.org/downloads/archivedata archived] instance of FlyBase earlier than FB2022_05.
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For users working with the current release at [http://flybase.org/ flybase.org], please see our page about [[FlyBase:JBrowse]], the genome viewer that replaced GBrowse.
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|}
  
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[[Category:Help]]
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* [[FlyBase:GBrowse|FlyBase GBrowse Help]]
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* [[FlyBase:GBrowse Tracks|GBrowse Tracks]]

Latest revision as of 21:15, 11 October 2023


FlyBase Help

FlyBase Help Index

Tools

Downloads

FTP site

External Resource Links

Community

Species

About FlyBase

Help

FlyBase Report Help

FlyBase Report Help and Documentation

Documentation

Nomenclature

Gene Model Annotation

GO Annotation

Computed Fields

Links to and from FlyBase

General


Tools for Archived Instances of FlyBase

Warning
Information about GBrowse is only relevant to users of an archived instance of FlyBase earlier than FB2022_05.

For users working with the current release at flybase.org, please see our page about FlyBase:JBrowse, the genome viewer that replaced GBrowse.

Retrieved from "https://wiki.flybase.org/mediawiki/index.php?title=FlyBase:Help&oldid=172502"