Difference between revisions of "FlyBase:Help"
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* [[FlyBase:JBrowse|FlyBase JBrowse Help]] | * [[FlyBase:JBrowse|FlyBase JBrowse Help]] | ||
* [[FlyBase:JBrowse Tracks|JBrowse Tracks]] | * [[FlyBase:JBrowse Tracks|JBrowse Tracks]] | ||
| + | * [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]] | ||
==Downloads== | ==Downloads== | ||
* [[FlyBase:Downloads Overview|Downloads Overview]] | * [[FlyBase:Downloads Overview|Downloads Overview]] | ||
| − | * [http://flybase.org/ | + | * [http://flybase.org/cgi-bin/get_static_page.pl?file=bulkdata7.html&title=Current%20Release Precomputed data files for the current release] |
| − | * [http://flybase.org/ | + | * [http://flybase.org/cgi-bin/get_static_page.pl?file=archivedata3.html&title=Archived%20Releases Archived data files for recent releases] |
| − | * [ | + | * [[Media:DmelMapTable.160615c.xlsx | Map conversion]] |
:'''FTP site''' | :'''FTP site''' | ||
| − | ::*[ftp://ftp.flybase. | + | ::*[ftp://ftp.flybase.org/releases/ Index of releases] |
| − | ::*[ftp://ftp.flybase. | + | ::*[ftp://ftp.flybase.org/genomes/ Index of Genomes] |
==Links== | ==Links== | ||
| Line 36: | Line 37: | ||
** [http://www.flyrnai.org/tools/protocols/web/| DRSC Protocols page] | ** [http://www.flyrnai.org/tools/protocols/web/| DRSC Protocols page] | ||
*[[FlyBase:Funding|Funding]] | *[[FlyBase:Funding|Funding]] | ||
| − | *[http://www.alliancegenome.org | + | *[http://www.alliancegenome.org Alliance of Genome Resources] |
*[http://www.fruitfly.org/ BDGP] | *[http://www.fruitfly.org/ BDGP] | ||
*[https://dgrc.cgb.indiana.edu/Home DGRC] | *[https://dgrc.cgb.indiana.edu/Home DGRC] | ||
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* [[FlyBase:Gene_Snapshots| Gene Snapshots]] | * [[FlyBase:Gene_Snapshots| Gene Snapshots]] | ||
* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)] | * [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)] | ||
| + | * [[FlyBase:Fly Board| Fly Board]] | ||
==Species== | ==Species== | ||
| Line 73: | Line 75: | ||
* [[FlyBase:About#FlyBase_Publications| FlyBase Publications]] | * [[FlyBase:About#FlyBase_Publications| FlyBase Publications]] | ||
* [[FlyBase:About#FlyBase_Support| FlyBase Support]] | * [[FlyBase:About#FlyBase_Support| FlyBase Support]] | ||
| + | * [[FlyBase:FlyBase Website Access Fee FAQ| FlyBase Website Access Fee FAQ]] | ||
==Help== | ==Help== | ||
| − | + | * [https://www.youtube.com/channel/UCG-KSNq46vkezAwbrVQojYA/videos FlyBase Video Tutorials] | |
| − | * [https://www.youtube.com/ | + | * [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]] |
| − | * [[FlyBase:Report Help|Field-by-field guides to FlyBase reports]] | ||
* [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]] | * [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]] | ||
* [[FlyBase:Author Guidelines|Author Guidelines]] | * [[FlyBase:Author Guidelines|Author Guidelines]] | ||
| Line 83: | Line 85: | ||
* [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase pamphlets, powerpoints and posters]] | * [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase pamphlets, powerpoints and posters]] | ||
* [[FlyBase:New to Flies?|Useful links if you are new to Flies]] | * [[FlyBase:New to Flies?|Useful links if you are new to Flies]] | ||
| − | * [http:// | + | * [http://contact/email Contact FlyBase] |
* [[FlyBase:Vectors and Constructs|Commonly used vectors and constructs]] | * [[FlyBase:Vectors and Constructs|Commonly used vectors and constructs]] | ||
| + | * [[FlyBase:FAQ|FAQs]] | ||
==FlyBase Report Help== | ==FlyBase Report Help== | ||
| Line 90: | Line 93: | ||
'''FlyBase Report Help and Documentation''' | '''FlyBase Report Help and Documentation''' | ||
| − | *[[FlyBase:Report Help|Field-by-field guides to FlyBase reports]] | + | * [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]] |
==Documentation== | ==Documentation== | ||
Revision as of 16:49, 16 May 2018
FlyBase Help
FlyBase Help Index
Tools
- Tools Overview
- FlyBase GBrowse Help
- GBrowse Tracks
- FlyBase JBrowse Help
- JBrowse Tracks
- Feature differences between JBrowse and GBrowse on FlyBase
Downloads
- Downloads Overview
- Precomputed data files for the current release
- Archived data files for recent releases
- Map conversion
- FTP site
Links
- All External Resources
- Funding
- Alliance of Genome Resources
- BDGP
- DGRC
- DIS by Issue
- FlyExpress
- Interactive Fly
- modENCODE
- Textpresso for Fly
Community
- Fast Track Your Paper
- FlyBase Community Advisory Group
- FlyBase Forum
- Find A Person
- FlyBase Newsletter
- bionet.dros
- FlyGene Wiki
- Gene Snapshots
- Twitter (@FlyBaseDotOrg)
- Fly Board
Species
- Phylogeny
- Original 12 Sequenced Drosophila Species
- Synteny Table for Original 12 Sequenced Drosophila Species
- Color Illustrations of more than 100 Drosophila Species
- Abbreviations
About FlyBase
- Release Notes
- New in Release
- Release Schedule
- FlyBase Positions
- Citing FlyBase
- FlyBase Consortium
- FlyBase Publications
- FlyBase Support
- FlyBase Website Access Fee FAQ
Help
- FlyBase Video Tutorials
- Field-by-field guides to FlyBase reports
- Controlled vocabularies used by FlyBase
- Author Guidelines
- Personal communications to FlyBase
- FlyBase pamphlets, powerpoints and posters
- Useful links if you are new to Flies
- Contact FlyBase
- Commonly used vectors and constructs
- FAQs
FlyBase Report Help
FlyBase Report Help and Documentation
Documentation
Nomenclature
Gene Model Annotation
- Gene Model Annotation Guidelines (2012)
- Gene Model Annotation Guidelines (2007)
- What does the annotation evidence score mean?
GO Annotation
Computed Fields
Links to and from FlyBase