Difference between revisions of "FlyBase:Help"

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====Tools====
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__TOC__
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=FlyBase Help=
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==[[FlyBase:FlyBase Help Index | FlyBase Help Index]]==
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==Tools==
 
* [[FlyBase:Tools Overview|Tools Overview]]
 
* [[FlyBase:Tools Overview|Tools Overview]]
 
* [[FlyBase:GBrowse|FlyBase GBrowse Help]]
 
* [[FlyBase:GBrowse|FlyBase GBrowse Help]]
 
* [[FlyBase:GBrowse Tracks|GBrowse Tracks]]
 
* [[FlyBase:GBrowse Tracks|GBrowse Tracks]]
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* [[FlyBase:JBrowse|FlyBase JBrowse Help]]
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* [[FlyBase:JBrowse Tracks|JBrowse Tracks]]
  
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====Downloads====
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==Downloads==
 
* [[FlyBase:Downloads Overview|Downloads Overview]]
 
* [[FlyBase:Downloads Overview|Downloads Overview]]
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* [http://{{SERVERNAME}}/static_pages/downloads/bulkdata7.html Precomputed data files for the current release]
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=bulkdata7.html&title=Current%20Release Precomputed data files for the current release]
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* [http://{{SERVERNAME}}/static_pages/downloads/archivedata3.html Archived data files for recent releases]
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=archivedata3.html&title=Archived%20Releases Archived data files for recent releases]
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* [http://{{SERVERNAME}}/static_pages/downloads/current/map_conversion/cyto-genetic-seq.tsv Map Conversion]
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* [[Media:DmelMapTable.160615c.xlsx | Map conversion]]
 
:'''FTP site'''
 
:'''FTP site'''
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::*[ftp://ftp.flybase.net/releases/ Index of releases]
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::*[ftp://ftp.flybase.org/releases/ Index of releases]
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::*[ftp://ftp.flybase.net/genomes/ Index of Genomes]
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::*[ftp://ftp.flybase.org/genomes/ Index of Genomes]
  
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====Links====
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==Links==
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* [[FlyBase:All Resources|All Resources]]
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* [[FlyBase:External Resources|All External Resources]]
 
** [[FlyBase:Drosophila Network Resources|Drosophila Network Resources]]
 
** [[FlyBase:Drosophila Network Resources|Drosophila Network Resources]]
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** [[FlyBase:Drosophila Material Resources|Drosophila Material Resouces (Reagents)]]
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** [[FlyBase:Drosophila Material Resources|Drosophila Material Resources (Reagents)]]
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* [[FlyBase:Model Organism Databases|Model Organism Databases]]
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** [[FlyBase:CRISPR|CRISPR links page]]
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* [[FlyBase:Stock Collections|Stock Collections]]
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** [[FlyBase:Stocks|Stocks links page]]
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** [[FlyBase:RNAi|RNAi links page]]
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** [[FlyBase:Model Organism Databases|Model Organism Databases links page]]
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** [[FlyBase:Neuroscience|Neuroscience links page]]
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** [[FlyBase:Antibodies|Antibodies links page]]
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** [[FlyBase:Images|Images links page]]
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** [[FlyBase:Maps|Maps links page]]
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** [http://www.flyrnai.org/tools/protocols/web/| DRSC Protocols page]
 
*[[FlyBase:Funding|Funding]]
 
*[[FlyBase:Funding|Funding]]
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*[http://www.alliancegenome.org Alliance of Genome Resources]
 
*[http://www.fruitfly.org/ BDGP]
 
*[http://www.fruitfly.org/ BDGP]
 
*[https://dgrc.cgb.indiana.edu/Home DGRC]
 
*[https://dgrc.cgb.indiana.edu/Home DGRC]
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*[http://www.textpresso.org/fly/ Textpresso for Fly]
 
*[http://www.textpresso.org/fly/ Textpresso for Fly]
  
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====Community====
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==Community==
  
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* [http://{{SERVERNAME}}/submission/publication/ Fast Track Your Paper]
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* [http://flybase.org/submission/publication/ Fast Track Your Paper]
 
* [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]]
 
* [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]]
 
* [https://groups.google.com/forum/#!forum/flybase FlyBase Forum]
 
* [https://groups.google.com/forum/#!forum/flybase FlyBase Forum]
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* [http://{{SERVERNAME}}/static_pages/people/people_query6.html Find A Person]
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* [http://flybase.org/static_pages/people/people_query6.html Find A Person]
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* [http://{{SERVERNAME}}/static_pages/news/newsletter.html Newsletter]
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* [http://flybase.org/static_pages/news/newsletter.html FlyBase Newsletter]
 
* [http://www.bio.net/hypermail/dros/ bionet.dros]
 
* [http://www.bio.net/hypermail/dros/ bionet.dros]
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* [http://{{SERVERNAME}}/wiki/Category:Genes FlyGene Wiki]
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* [http://flybase.org/wiki/Category:Genes FlyGene Wiki]
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* [[FlyBase:Gene_Snapshots| Gene Snapshots]]
 
* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)]
 
* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)]
  
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====Species====
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==Species==
 
* [[FlyBase:Phylogeny|Phylogeny]]
 
* [[FlyBase:Phylogeny|Phylogeny]]
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* [http://{{SERVERNAME}}/static_pages/species/sequenced_species.html Sequenced Species]
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* [http://flybase.org/static/sequenced_species Original 12 Sequenced Drosophila Species]
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* [http://{{SERVERNAME}}/maps/chromosomes/synteny_table.html Synteny Table]
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* [http://flybase.org/maps/synteny Synteny Table for Original 12 Sequenced Drosophila Species]
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* [http://{{SERVERNAME}}/static_pages/anatomy/Drosophilidae/Drosophilidae.html Color Illustrations]
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* [http://flybase.org/static/Drosophilidae Color Illustrations of more than 100 Drosophila Species]
 
* [[FlyBase:Abbreviations|Abbreviations]]
 
* [[FlyBase:Abbreviations|Abbreviations]]
  
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====About FlyBase====
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==About FlyBase==
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=release_notes.html&title=Release%20Notes Release Notes]
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* [http://{{SERVERNAME}}/static_pages/docs/release_notes.html Release Notes]
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* [http://flybase.org/static/new-this-release New in Release]
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* [http://{{SERVERNAME}}/static_pages/docs/new_this_release.html New in Release]
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* [http://flybase.org/static/release_schedule Release Schedule]
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* [http://{{SERVERNAME}}/static_pages/docs/release_schedule.html Release Schedule]
 
 
* [[FlyBase:FlyBase Positions| FlyBase Positions]]
 
* [[FlyBase:FlyBase Positions| FlyBase Positions]]
 
* [[FlyBase:About#Citing_FlyBase| Citing FlyBase]]
 
* [[FlyBase:About#Citing_FlyBase| Citing FlyBase]]
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* [[FlyBase:About#FlyBase_Support| FlyBase Support]]
 
* [[FlyBase:About#FlyBase_Support| FlyBase Support]]
  
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====Help====
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==Help==
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* [https://www.youtube.com/channel/UCG-KSNq46vkezAwbrVQojYA/videos FlyBase Video Tutorials]
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* [[FlyBase:FAQ|FAQs]]
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* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
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* [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase Pamphlets, Powerpoints and Posters]]
 
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* [https://www.youtube.com/user/FlyBaseDB Video Tutorials]
 
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* [[FlyBase:Report Help|FlyBase Report Help and Documentation]]
 
 
* [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]]
 
* [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]]
 
* [[FlyBase:Author Guidelines|Author Guidelines]]
 
* [[FlyBase:Author Guidelines|Author Guidelines]]
 
* [[FlyBase:Personal communications to FlyBase|Personal communications to FlyBase]]
 
* [[FlyBase:Personal communications to FlyBase|Personal communications to FlyBase]]
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* [http://{{SERVERNAME}}/cgi-bin/mailto-fbhelp.html Contact FlyBase]
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* [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase pamphlets, powerpoints and posters]]
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* [[FlyBase:New to Flies?|New to Flies?]]
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* [[FlyBase:New to Flies?|Useful links if you are new to Flies]]
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* [http://{{SERVERNAME}}/static_pages/search/site_search.html Google<sup>TM</sup> FlyBase]
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* [http://contact/email Contact FlyBase]
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* [[FlyBase:Vectors and Constructs|Commonly Used Vectors and Constructs]]
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* [[FlyBase:Vectors and Constructs|Commonly used vectors and constructs]]
 +
* [[FlyBase:FAQ|FAQs]]
  
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====Documentation====
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==FlyBase Report Help==
  
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::'''FlyBase Report Help and Documentation'''
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'''FlyBase Report Help and Documentation'''
  
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::* [[FlyBase:Report Help|FlyBase Report Help and Documentation]]
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* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
  
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::'''Nomenclature'''
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==Documentation==
  
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::* [[FlyBase:Nomenclature|Nomenclature Guidelines]]
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'''Nomenclature'''
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::* [[FlyBase:Nontraditional alleles |Nontraditional alleles]]
 
  
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::'''Gene Model Annotation'''
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*[[FlyBase:Nomenclature|Nomenclature Guidelines]]
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*[[FlyBase:Nontraditional alleles |Nontraditional alleles]]
  
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::* [[FlyBase:Gene Model Annotation Guidelines|Gene Model Annotation Guidelines (2012)]]
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'''Gene Model Annotation'''
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::* [[FlyBase:Gene_Model_Annotation_Guidelines#G.7._Gene_Model_Annotation_Guidelines_.282007.29|Gene Model Annotation Guidelines (2007)]]
 
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::* [[FlyBase:Annotation Evidence Score|What does the annotation evidence score mean?]]
 
  
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::'''GO Annotation'''
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*[[FlyBase:Gene Model Annotation Guidelines|Gene Model Annotation Guidelines (2012)]]
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*[[FlyBase:Gene_Model_Annotation_Guidelines#G.7._Gene_Model_Annotation_Guidelines_.282007.29|Gene Model Annotation Guidelines (2007)]]
 +
*[[FlyBase:Annotation Evidence Score|What does the annotation evidence score mean?]]
  
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::* [[FlyBase:Gene Ontology (GO) Annotation |Classification of Gene Products using Gene Ontology (GO) terms]]
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'''GO Annotation'''
  
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::'''Computed Fields'''
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*[[FlyBase:Gene Ontology (GO) Annotation |Classification of Gene Products using Gene Ontology (GO) terms]]
  
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::* [[FlyBase:Computed Feature type of genes | Computed Feature type of genes]]
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'''Computed Fields'''
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::* [[FlyBase:Computed cytological data | Computed cytological data]]
 
  
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::'''Links to and from FlyBase'''
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*[[FlyBase:Computed Feature type of genes | Computed Feature type of genes]]
 +
*[[FlyBase:Computed cytological data | Computed cytological data]]
  
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::* [[FlyBase:RefMan F.|Instructions for creating links to and from FlyBase]]
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'''Links to and from FlyBase'''
  
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====News====
+
*[[FlyBase:RefMan F.|Instructions for creating links to and from FlyBase]]
  
−
* [[FlyBase:FlyBase News|FlyBase News]]
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==General==
−
* [[FlyBase:Meetings|Meetings]]
 
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* [[FlyBase:Courses|Courses]]
 
  
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====General====
 
−
 
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* [[FlyBase:Zotero support in FlyBase|Zotero support in FlyBase]]
 
 
* [[FlyBase:Fly Board|Fly Board and White Papers]]
 
* [[FlyBase:Fly Board|Fly Board and White Papers]]
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[[Category:Help]]
 
[[Category:Help]]

Revision as of 22:49, 19 December 2017


FlyBase Help

FlyBase Help Index

Tools

Downloads

FTP site

Links

Community

Species

About FlyBase

Help

FlyBase Report Help

FlyBase Report Help and Documentation

Documentation

Nomenclature

Gene Model Annotation

GO Annotation

Computed Fields

Links to and from FlyBase

General

Retrieved from "https://wiki.flybase.org/mediawiki/index.php?title=FlyBase:Help&oldid=169514"