Difference between revisions of "FlyBase:Help"

From FlyBase Wiki
Jump to navigation Jump to search
 
(38 intermediate revisions by 6 users not shown)
Line 4: Line 4:
 
=FlyBase Help=
 
=FlyBase Help=
  
−
==Index and Links to all FlyBase Help Documentation==
+
==[[FlyBase:FlyBase Help Index | FlyBase Help Index]]==
−
*[FlyBase:FlyBase Help Index] | FlyBase Help Index]
 
  
 
==Tools==
 
==Tools==
 
* [[FlyBase:Tools Overview|Tools Overview]]
 
* [[FlyBase:Tools Overview|Tools Overview]]
−
* [[FlyBase:GBrowse|FlyBase GBrowse Help]]
 
−
* [[FlyBase:GBrowse Tracks|GBrowse Tracks]]
 
 
* [[FlyBase:JBrowse|FlyBase JBrowse Help]]
 
* [[FlyBase:JBrowse|FlyBase JBrowse Help]]
 
* [[FlyBase:JBrowse Tracks|JBrowse Tracks]]
 
* [[FlyBase:JBrowse Tracks|JBrowse Tracks]]
 +
* [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]]
  
 
==Downloads==
 
==Downloads==
 
* [[FlyBase:Downloads Overview|Downloads Overview]]
 
* [[FlyBase:Downloads Overview|Downloads Overview]]
−
* [http://flybase.org/static_pages/downloads/bulkdata7.html Precomputed data files for the current release]
+
* [http://flybase.org/cgi-bin/get_static_page.pl?file=bulkdata7.html&title=Current%20Release Precomputed data files for the current release]
−
* [http://flybase.org/static_pages/downloads/archivedata3.html Archived data files for recent releases]
+
* [http://flybase.org/cgi-bin/get_static_page.pl?file=archivedata3.html&title=Archived%20Releases Archived data files for recent releases]
−
* [http://flybase.org/static_pages/downloads/current/map_conversion/cyto-genetic-seq.tsv Map Conversion]
+
* [[Media:DmelMapTable.160615c.xlsx | Map conversion]]
 
:'''FTP site'''
 
:'''FTP site'''
−
::*[ftp://ftp.flybase.net/releases/ Index of releases]
+
::*[ftp://ftp.flybase.org/releases/ Index of releases]
−
::*[ftp://ftp.flybase.net/genomes/ Index of Genomes]
+
::*[ftp://ftp.flybase.org/genomes/ Index of Genomes]
  
−
==Links==
+
==External Resource Links==
 
* [[FlyBase:External Resources|All External Resources]]
 
* [[FlyBase:External Resources|All External Resources]]
−
** [[FlyBase:Drosophila Network Resources|Drosophila Network Resources]]
+
** [[FlyBase:Drosophila Network Resources| Curated list of Drosophila Online Resources]]
−
** [[FlyBase:Drosophila Material Resources|Drosophila Material Resources (Reagents)]]
+
** [[FlyBase:Drosophila Material Resources|Curated list of Drosophila Material Resources (Reagents)]]
 
** [[FlyBase:CRISPR|CRISPR links page]]
 
** [[FlyBase:CRISPR|CRISPR links page]]
 +
** [[FlyBase:ScRNA-Seq|ScRNA-Seq links page]]
 +
** [[FlyBase:RNAi|RNAi links page]]
 
** [[FlyBase:Stocks|Stocks links page]]
 
** [[FlyBase:Stocks|Stocks links page]]
−
** [[FlyBase:RNAi|RNAi links page]]
+
** [[FlyBase:Antibodies|Antibodies links page]]
 +
** [[FlyBase:Neuroscience|Neuroscience links page]]
 
** [[FlyBase:Model Organism Databases|Model Organism Databases links page]]
 
** [[FlyBase:Model Organism Databases|Model Organism Databases links page]]
−
** [[FlyBase:Neuroscience|Neuroscience links page]]
 
−
** [[FlyBase:Antibodies|Antibodies links page]]
 
 
** [[FlyBase:Images|Images links page]]
 
** [[FlyBase:Images|Images links page]]
 
** [[FlyBase:Maps|Maps links page]]
 
** [[FlyBase:Maps|Maps links page]]
 
** [http://www.flyrnai.org/tools/protocols/web/| DRSC Protocols page]
 
** [http://www.flyrnai.org/tools/protocols/web/| DRSC Protocols page]
−
*[[FlyBase:Funding|Funding]]
+
** [[FlyBase:Papers with technical advances|Papers with technical advances links page]]
−
*[http://www.alliancegenome.org// Alliance of Genome Resources]
+
** [[FlyBase:GSEA|Gene Set Enrichment Tools links page]]
−
*[http://www.fruitfly.org/ BDGP]
 
−
*[https://dgrc.cgb.indiana.edu/Home DGRC]
 
−
*[http://www.ou.edu/journals/dis/byissue.html DIS by Issue]
 
−
*[http://www.flyexpress.net/ FlyExpress]
 
−
*[http://www.sdbonline.org/sites/fly/aimain/1aahome.htm Interactive Fly]
 
−
*[http://www.modencode.org/ modENCODE]
 
−
*[http://www.textpresso.org/fly/ Textpresso for Fly]
 
  
 
==Community==
 
==Community==
  
 
* [http://flybase.org/submission/publication/ Fast Track Your Paper]
 
* [http://flybase.org/submission/publication/ Fast Track Your Paper]
 +
* [[FlyBase:Fly Lab List| Fly Lab List]]
 
* [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]]
 
* [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]]
 
* [https://groups.google.com/forum/#!forum/flybase FlyBase Forum]
 
* [https://groups.google.com/forum/#!forum/flybase FlyBase Forum]
−
* [http://flybase.org/static_pages/people/people_query6.html Find A Person]
+
* [https://flybase.org/community/newsletter FlyBase Newsletter]
−
* [http://flybase.org/static_pages/news/newsletter.html FlyBase Newsletter]
 
 
* [http://www.bio.net/hypermail/dros/ bionet.dros]
 
* [http://www.bio.net/hypermail/dros/ bionet.dros]
−
* [http://flybase.org/wiki/Category:Genes FlyGene Wiki]
+
* [[FlyBase:Fly Board| Fly Board]]
−
* [[Gene Snapshots]]
+
* [[FlyBase:NIH Funding| NIH Funding]]
 +
* [https://flyslackco.slack.com/ FlySlack]
 +
* [[FlyBase:Gene_Snapshots| Gene Snapshots]]
 
* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)]
 
* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)]
  
 
==Species==
 
==Species==
 
* [[FlyBase:Phylogeny|Phylogeny]]
 
* [[FlyBase:Phylogeny|Phylogeny]]
−
* [http://flybase.org/static_pages/species/sequenced_species.html Original 12 Sequenced Drosophila Species]
+
* [http://flybase.org/static/sequenced_species Original 12 Sequenced Drosophila Species]
−
* [http://flybase.org/maps/chromosomes/synteny_table.html Synteny Table for Original 12 Sequenced Drosophila Species]
+
* [http://flybase.org/maps/synteny Synteny Table for Original 12 Sequenced Drosophila Species]
−
* [http://flybase.org/static_pages/anatomy/Drosophilidae/Drosophilidae.html Color Illustrations of more than 100 Drosophila Species]
+
* [http://flybase.org/static/Drosophilidae Color Illustrations of more than 100 Drosophila Species]
 
* [[FlyBase:Abbreviations|Abbreviations]]
 
* [[FlyBase:Abbreviations|Abbreviations]]
  
 
==About FlyBase==
 
==About FlyBase==
−
* [http://flybase.org/static_pages/docs/release_notes.html Release Notes]
+
* [http://flybase.org/cgi-bin/get_static_page.pl?file=release_notes.html&title=Release%20Notes Release Notes]
−
* [http://flybase.org/static_pages/docs/new_this_release.html New in Release]
+
* [http://flybase.org/static/new-this-release New in Release]
−
* [http://flybase.org/static_pages/docs/release_schedule.html Release Schedule]
+
* [http://flybase.org/static/release_schedule Release Schedule]
 
* [[FlyBase:FlyBase Positions| FlyBase Positions]]
 
* [[FlyBase:FlyBase Positions| FlyBase Positions]]
 
* [[FlyBase:About#Citing_FlyBase| Citing FlyBase]]
 
* [[FlyBase:About#Citing_FlyBase| Citing FlyBase]]
 
* [[FlyBase:About#FlyBase_Consortium| FlyBase Consortium]]
 
* [[FlyBase:About#FlyBase_Consortium| FlyBase Consortium]]
 +
* [[FlyBase:Overview| FlyBase Overview]]
 
* [[FlyBase:About#FlyBase_Publications| FlyBase Publications]]
 
* [[FlyBase:About#FlyBase_Publications| FlyBase Publications]]
 
* [[FlyBase:About#FlyBase_Support| FlyBase Support]]
 
* [[FlyBase:About#FlyBase_Support| FlyBase Support]]
 +
* [[FlyBase:FlyBase Website Access Fee FAQ| FlyBase Website Access Fee FAQ]]
  
 
==Help==
 
==Help==
−
* [[FlyBase:FAQ|FAQs]]
+
* [[FlyBase:New to Flies?|Useful links if you are new to Flies]]
−
* [https://www.youtube.com/user/FlyBaseDB FlyBase video tutorials]
+
* [https://wiki.flybase.org/wiki/FlyBase:Tweetorial FlyBase Tweetorials]
−
* [[FlyBase:Report Help|Field-by-field guides to FlyBase reports]]
+
* [https://www.youtube.com/channel/UCG-KSNq46vkezAwbrVQojYA/videos FlyBase Video Tutorials]
 +
* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
 
* [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]]
 
* [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]]
 
* [[FlyBase:Author Guidelines|Author Guidelines]]
 
* [[FlyBase:Author Guidelines|Author Guidelines]]
 
* [[FlyBase:Personal communications to FlyBase|Personal communications to FlyBase]]
 
* [[FlyBase:Personal communications to FlyBase|Personal communications to FlyBase]]
 
* [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase pamphlets, powerpoints and posters]]
 
* [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase pamphlets, powerpoints and posters]]
−
* [[FlyBase:New to Flies?|Useful links if you are new to Flies]]
+
* [https://flybase.org/contact/email Contact FlyBase]
−
* [http://flybase.org/cgi-bin/mailto-fbhelp.html Contact FlyBase]
 
−
* [http://flybase.org/static_pages/search/site_search.html Google<sup>TM</sup> FlyBase]
 
 
* [[FlyBase:Vectors and Constructs|Commonly used vectors and constructs]]
 
* [[FlyBase:Vectors and Constructs|Commonly used vectors and constructs]]
 +
* [[FlyBase:FAQ|FAQs]]
  
 
==FlyBase Report Help==
 
==FlyBase Report Help==
Line 92: Line 88:
 
'''FlyBase Report Help and Documentation'''
 
'''FlyBase Report Help and Documentation'''
  
−
*[[FlyBase:Report Help|Field-by-field guides to FlyBase reports]]
+
* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
  
 
==Documentation==
 
==Documentation==
Line 122: Line 118:
 
==General==
 
==General==
  
−
* [[FlyBase:Zotero support in FlyBase|Zotero support in FlyBase]]
 
 
* [[FlyBase:Fly Board|Fly Board and White Papers]]
 
* [[FlyBase:Fly Board|Fly Board and White Papers]]
  
 
[[Category:Help]]
 
[[Category:Help]]
 +
 +
 +
==Tools for Archived Instances of FlyBase==
 +
 +
 +
 +
{| class="wikitable" style="text-align: center; color: red; margin: auto;"
 +
!colspan="1"|Warning
 +
|-
 +
|rowspan="1"|Information about GBrowse is only relevant to users of an [http://flybase.org/downloads/archivedata archived] instance of FlyBase earlier than FB2022_05.
 +
For users working with the current release at [http://flybase.org/ flybase.org], please see our page about [[FlyBase:JBrowse]], the genome viewer that replaced GBrowse.
 +
|}
 +
 +
* [[FlyBase:GBrowse|FlyBase GBrowse Help]]
 +
* [[FlyBase:GBrowse Tracks|GBrowse Tracks]]

Latest revision as of 21:15, 11 October 2023


FlyBase Help

FlyBase Help Index

Tools

Downloads

FTP site

External Resource Links

Community

Species

About FlyBase

Help

FlyBase Report Help

FlyBase Report Help and Documentation

Documentation

Nomenclature

Gene Model Annotation

GO Annotation

Computed Fields

Links to and from FlyBase

General


Tools for Archived Instances of FlyBase

Warning
Information about GBrowse is only relevant to users of an archived instance of FlyBase earlier than FB2022_05.

For users working with the current release at flybase.org, please see our page about FlyBase:JBrowse, the genome viewer that replaced GBrowse.

Retrieved from "https://wiki.flybase.org/mediawiki/index.php?title=FlyBase:Help&oldid=172502"