Difference between revisions of "FlyBase:FlyBase Positions"

Revision as of 19:43, 29 October 2020

scRNA-seq Biocurator/Ontologist (Cambridge, UK)

We are seeking to recruit a new member to our team at the University of Cambridge to contribute to the FlyBase Drosophila database (https://flybase.org). If you are looking for a fulfilling, fly-related career away from the bench, and enjoy the challenge of organizing complex data and presenting it clearly and concisely, then this is the job for you!

A large and growing community of Drosophila biologists is producing single cell transcriptomic data with potentially high value to the research community. This includes both individual labs and also large-scale community efforts focussed on sharing and annotating single cell RNA sequencing (scRNA-seq) datasets covering the whole fly, such as Fly Cell Atlas (https://flycellatlas.org/). The successful applicant will work closely with the Gene Expression Team (https://www.ebi.ac.uk/about/people/irene-papatheodorou) at EMBL-EBI, in particular those members responsible for the Single Cell Expression Atlas (scAtlas) (https://www.ebi.ac.uk/gxa/sc/home), in order to maximise the usefulness of the scRNA-seq data to the community.

The work will include:

- Identifying and prioritising published Drosophila scRNA-seq datasets for curation

- Curation of scRNA-seq experimental metadata into the EMBL-EBI scAtlas and/or FlyBase as appropriate

- Working with biocurators and software developers at FlyBase and the EMBL-EBI scAtlas to: harmonise the scRNA-seq data models used at each database, provide access to scRNA-seq data on FlyBase, add links between FlyBase and the scAtlas

- Extending the Drosophila Anatomy Ontology as needed to provide accurate terms for annotation of scRNA-seq data

- Working with EMBL-EBI Gene Expression Team members to help develop interactive fly anatomograms.

Closing date: 4th November 2020

More details and how to apply info: http://www.jobs.cam.ac.uk/job/27175/

@@ Line 1: / Line 1: @@
-'''Genetic data curator'''
+'''scRNA-seq Biocurator/Ontologist (Cambridge, UK)'''
-'''FlyBase, University of Cambridge UK'''
+We are seeking to recruit a new member to our team at the University of Cambridge to contribute to the FlyBase Drosophila database (https://flybase.org). If you are looking for a fulfilling, fly-related career away from the bench, and enjoy the challenge of organizing complex data and presenting it clearly and concisely, then this is the job for you!
-FlyBase (http://flybase.org/) seeks a full-time biocurator to join the existing group at the University of Cambridge, UK (http://www.gen.cam.ac.uk/research/flybase.html). If you are looking for a fulfilling, fly-related career away from the bench, and enjoy the challenge of organizing complex data and presenting it clearly and concisely, then this is the job for you!
+A large and growing community of Drosophila biologists is producing single cell transcriptomic data with potentially high value to the research community. This includes both individual labs and also large-scale community efforts focussed on sharing and annotating single cell RNA sequencing (scRNA-seq) datasets covering the whole fly, such as Fly Cell Atlas (https://flycellatlas.org/). The successful applicant will work closely with the Gene Expression Team (https://www.ebi.ac.uk/about/people/irene-papatheodorou) at EMBL-EBI, in particular those members responsible for the Single Cell Expression Atlas (scAtlas) (https://www.ebi.ac.uk/gxa/sc/home), in order to maximise the usefulness of the scRNA-seq data to the community.
-The primary responsibility of the FlyBase-Cambridge site is to identify genetic data from scientific articles concerning Drosophila and to record these data in a systematic manner. The data we capture include all genetic objects (genes, alleles, transgenic constructs, etc.) plus associated information such as phenotypes, genetic interactions, gene product functions and models of human disease. Curated data are subsequently integrated into the FlyBase database and made freely available via our website.
+The work will include:
-Established staff also: research strategies to improve data curation; work with other FlyBase sites to improve data display/querying on the website; interact with our user community by answering HelpMail and giving presentations/workshops at research conferences; have the opportunity to develop programming skills; contribute to FlyBase publications.
+- Identifying and prioritising published Drosophila scRNA-seq datasets for curation
-See http://www.jobs.cam.ac.uk/job/6924/ for more information and aplication details.
+- Curation of scRNA-seq experimental metadata into the EMBL-EBI scAtlas and/or FlyBase as appropriate
+- Working with biocurators and software developers at FlyBase and the EMBL-EBI scAtlas to: harmonise the scRNA-seq data models used at each database, provide access to scRNA-seq data on FlyBase, add links between FlyBase and the scAtlas
+- Extending the Drosophila Anatomy Ontology as needed to provide accurate terms for annotation of scRNA-seq data
+- Working with EMBL-EBI Gene Expression Team members to help develop interactive fly anatomograms.
-'''Genome Database Curator'''
-'''FlyBase, Harvard University'''
-FlyBase seeks a full-time scientific curator/annotator to join our team at the Gelbart Lab in the Department for Molecular and Cellular Biology, Harvard. Curational responsibilities at the Harvard site include the scanning and abstracting of scientific literature on the molecular biology of Drosophila, annotation and analysis of Drosophila genome(s), coordination of the inclusion of high-throughput molecular data sets into FlyBase, and design of improved interfaces for providing molecular data to users. Curators work as a part of a team, interacting with biologists at other FlyBase sites, and coordinating with software engineers to develop and improve software. Curators also interface with the scientific community, assisting users on line and at research conference workshops. FlyBase is constantly evolving, seeking both to improve and to expand its role within the Drosophila and wider scientific communities. This position is grant-funded.
+Closing date: 4th November 2020
-'''Basic Qualifications''': Ph.D. in molecular biology or genetics. Minimum three years experience with molecular genetics and Drosophila biology.
+More details and how to apply info: http://www.jobs.cam.ac.uk/job/27175/
-'''Additional Qualifications''': Extensive Drosophilia research experience. Excellent communication skills in the English language, both written and oral. Enthusiasm, expertise and ideas concerning emerging directions in Drosophila biology and genomic/proteomic analysis. Familiarity with managing databases or spreadsheets and standardized formats (for example, GFF3, FASTA).
-'''To Apply''': Apply for this position at ASPIRE, the Harvard Recruitment Management System: https://jobs.brassring.com/1033/asp/tg/cim_jobdetail.asp?partnerID=25240&siteID=5341&AReq=34261BR
-In addition, please contact William Gelbart (gelbart<at>morgan.harvard.edu), and include a CV, a description of research experience and names of three references. Please cc your communication to senior curator Lynn Crosby (crosby<at>morgan.harvard.edu) and to the project administrative assistant, Carol Sutherland (casuther<at>fas.harvard.edu).
-Note: This page is for FlyBase positions only. If you would like to post a job opening, please use the [http://flybase.org/forums/viewforum.php?f=8 Job Postings] section withing our [http://flybase.org/forums/ FlyBase Forum]
-[[Category:DONE]]

Difference between revisions of "FlyBase:FlyBase Positions"

Revision as of 19:43, 29 October 2020

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