Difference between revisions of "FlyBase:FlyBase Help Index"

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== '''Tweetorials''' ==
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'''Topic-specific FlyBase Tweetorials'''
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*[[FlyBase:Tweetorial | All Tweetorials]]
  
 
== '''Video Tutorials''' ==
 
== '''Video Tutorials''' ==
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'''
 
'''
 
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
 
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part II: Using RNA-Seq Profile Search]
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*[https://www.youtube.com/watch?v=Ho_PZ4XB8y8&t=17s RNA-Seq Part II: Using RNA-Seq Profile Search]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
 
*[https://www.youtube.com/watch?v=jgCON15SiRo Finding related genes/alleles in FlyBase: Vocabularies]
 
*[https://www.youtube.com/watch?v=jgCON15SiRo Finding related genes/alleles in FlyBase: Vocabularies]
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'''
 
'''
 
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
 
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part II: Using RNA-Seq Profile Search]
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*[https://www.youtube.com/watch?v=Ho_PZ4XB8y8&t=17s RNA-Seq Part II: Using RNA-Seq Profile Search]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
 
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
  
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*[[FlyBase:Cell Line Report | Cell Line Report]]
 
*[[FlyBase:Cell Line Report | Cell Line Report]]
 
*[[FlyBase:Clone Report | Clone Report]]
 
*[[FlyBase:Clone Report | Clone Report]]
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*[[FlyBase:Vocabularies | CV (Controlled Vocabulary) Term Report]]
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*[[FlyBase:Dataset-Collection Report | Dataset/Collection Report]]
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*[[FlyBase:Experimental Tool | Experimental Tool Report]]
 
*[[FlyBase:Gene Report | Gene Report]]
 
*[[FlyBase:Gene Report | Gene Report]]
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*[[FlyBase:Gene Group Report | Gene Group Report]]
 
*[[FlyBase:Human Disease Report | Human Disease Model Report]]
 
*[[FlyBase:Human Disease Report | Human Disease Model Report]]
 
*[[FlyBase:Image Report | Image Report]]
 
*[[FlyBase:Image Report | Image Report]]
 
*[[FlyBase:Insertion Report | Insertion Report]]
 
*[[FlyBase:Insertion Report | Insertion Report]]
 
*[[FlyBase:Interaction Report | Interaction Report]]
 
*[[FlyBase:Interaction Report | Interaction Report]]
*[[FlyBase:Large Dataset Metadata Report | Large Dataset Metadata Report]]
 
 
*[[FlyBase:Natural Transposon Report | Natural Transposon Report]]
 
*[[FlyBase:Natural Transposon Report | Natural Transposon Report]]
*[[FlyBase:Person Report | Person Report]]
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*[[FlyBase:Pathway_Report | Pathway Report]]
 
*[[FlyBase:Polypeptide Report | Polypeptide Report]]
 
*[[FlyBase:Polypeptide Report | Polypeptide Report]]
 
*[[FlyBase:Recombinant Construct Report | Recombinant Construct Report]]
 
*[[FlyBase:Recombinant Construct Report | Recombinant Construct Report]]
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*[[FlyBase:Stock Report | Stock Report]]
 
*[[FlyBase:Stock Report | Stock Report]]
 
*[[FlyBase:Transcript Report | Transcript Report]]
 
*[[FlyBase:Transcript Report | Transcript Report]]
*[[FlyBase:Vocabularies | Vocabularies Term Report]]
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*[[FlyBase:Computed cytological data | Computed Cytological data]]
  
 
== '''Curation Documentation''' ==
 
== '''Curation Documentation''' ==
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*[[FlyBase:Gene Ontology (GO) Annotation | Gene Ontology (GO) Annotation]]
 
*[[FlyBase:Gene Ontology (GO) Annotation | Gene Ontology (GO) Annotation]]
 
*[[FlyBase:Nontraditional alleles | Nontraditional alleles]]
 
*[[FlyBase:Nontraditional alleles | Nontraditional alleles]]
*[[FlyBase:Vectors and Constructs | Vectors and Constructs]]
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*[[FlyBase:Vectors and Constructs | Comonly used Vectors and Constructs]]
  
 
== '''Tools and Downloads Documentation''' ==
 
== '''Tools and Downloads Documentation''' ==
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'''
 
'''
 
*[[FlyBase:Tools_Overview#Jump_to_Gene | Jump to Gene]]
 
*[[FlyBase:Tools_Overview#Jump_to_Gene | Jump to Gene]]
*[http://beta.flybase.org/cgi-bin/qb.pl QueryBuilder]
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*[[FlyBase:QueryBuilder Help | QueryBuilder]]
 
*[[FlyBase:QuickSearch | QuickSearch]]
 
*[[FlyBase:QuickSearch | QuickSearch]]
*[http://beta.flybase.org/vocabularies Vocabularies]
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*[[FlyBase:Vocabularies Tool | Vocabularies Tool]]
  
'''Genomic/Map tools Help
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'''Genomic/Map Tools Help
 
'''
 
'''
 
* BLAST
 
* BLAST
* [http://beta.flybase.org/cytosearrch CytoSearch]
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* [[FlyBase:CytoSearch | CytoSearch]]
* [http://beta.flybase.org/featuremapper FeatureMapper]
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* [[FlyBase:Feature Mapper | Feature Mapper]]
 
* [[FlyBase:GBrowse | FlyBase GBrowse Help]]
 
* [[FlyBase:GBrowse | FlyBase GBrowse Help]]
 
* [[FlyBase:GBrowse Tracks | GBrowse Tracks]]
 
* [[FlyBase:GBrowse Tracks | GBrowse Tracks]]
 
* [[FlyBase:JBrowse | FlyBase JBrowse Help]]
 
* [[FlyBase:JBrowse | FlyBase JBrowse Help]]
 
* [[FlyBase:JBrowse Tracks | JBrowse Tracks]]
 
* [[FlyBase:JBrowse Tracks | JBrowse Tracks]]
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* [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]]
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* [[FlyBase:Complete list of GBrowse/JBrowse Track Differences | Complete list of GBrowse/JBrowse Data Track Differences]]
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'''Retrieve/Convert Tools Help'''
 
'''Retrieve/Convert Tools Help'''
* [http://beta.flybase.org/batchdownload Batch Download]
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* [[FlyBase:Batch Download | Batch Download]]
* Coordinate Converter
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* [[FlyBase:Coordinate Converter | Coordinate Converter]]
* ID Converter  
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* [[FlyBase:ID_Converter | ID Converter ]]
* Sequence Downloader
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* [[FlyBase:SequenceDownloader | Sequence Downloader ]]
  
 
'''RNA-Seq Tools Help'''
 
'''RNA-Seq Tools Help'''
*[http://beta.flybase.org/rnaseq/rnaseq RNA-Seq Overview]
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* [[FlyBase:RNA-Seq Overview | RNA-Seq Overview]]
*[http://beta.flybase.org/rnaseq/region RNA-Seq by Region]
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* [http://{{flybaseorg}}/rnaseq/region RNA-Seq by Region]
*[http://beta.flybase.org/rnaseq/profile_search RNA-Seq Profile]
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* [http://{{flybaseorg}}/rnaseq/profile_search RNA-Seq Profile]
*[http://beta.flybase.org/rnaseq/simsearch RNA-Seq Similarity]
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* [http://{{flybaseorg}}/rnaseq/simsearch RNA-Seq Similarity]
  
 
'''Downloads'''
 
'''Downloads'''
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*[[FlyBase:Author Guidelines | Author Guidelines]]
 
*[[FlyBase:Author Guidelines | Author Guidelines]]
 
*[[FlyBase:About#Citing_FlyBase | Citing FlyBase]]
 
*[[FlyBase:About#Citing_FlyBase | Citing FlyBase]]
*Fast Track Your Paper
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*[[FlyBase:Fast Track Your Paper | Fast Track Your Paper]]
 
*[http://beta.flybase.org/community FlyBase Community]
 
*[http://beta.flybase.org/community FlyBase Community]
 
*[[FlyBase:Gene Snapshots | Gene Snapshots]]
 
*[[FlyBase:Gene Snapshots | Gene Snapshots]]
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== '''Other Help''' ==
 
== '''Other Help''' ==
  
*[[FlyBase:New to Flies? | New to Flies?]]
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*[[FlyBase:New to Flies? | Useful links if you are new to Flies]]
 
*[[FlyBase:Nomenclature | Nomenclature]]
 
*[[FlyBase:Nomenclature | Nomenclature]]
 
*[[FlyBase:Links to and from FlyBase | Links to and from FlyBase]]
 
*[[FlyBase:Links to and from FlyBase | Links to and from FlyBase]]
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*[[FlyBase:FlyBase Website Access Fee FAQ | FlyBase Website Access Fee FAQ]]
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*[[FlyBase:Community Advisory Group | FlyBase Community Advisory Group]]
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*[[FlyBase:FlyBase Guides: Pamphlets, Powerpoints, and Posters | FlyBase Guides: Pamphlets, Powerpoints, and Posters]]
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*[[FlyBase:Fly Board| Fly Board]]
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*[[FlyBase:Papers with technical advances | Papers with technical advances]]

Latest revision as of 21:52, 13 October 2021

Tweetorials

Topic-specific FlyBase Tweetorials

Video Tutorials

Basic navigation series

Tools series

RNA-Seq series

FlyBase Guidelines

Report Help

Field by Field guides to FlyBase Reports

Curation Documentation

Tools and Downloads Documentation

Tools Overview

Query Tools Help

Genomic/Map Tools Help


Retrieve/Convert Tools Help

RNA-Seq Tools Help

Downloads

Information for Authors

Other Help