Difference between revisions of "FlyBase:FlyBase Help Index"
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*[[FlyBase:Vocabularies | CV (Controlled Vocabulary) Term Report]] | *[[FlyBase:Vocabularies | CV (Controlled Vocabulary) Term Report]] | ||
*[[FlyBase:Dataset-Collection Report | Dataset/Collection Report]] | *[[FlyBase:Dataset-Collection Report | Dataset/Collection Report]] | ||
| + | *[[FlyBase:Experimental Tool | Experimental Tool Report]] | ||
*[[FlyBase:Gene Report | Gene Report]] | *[[FlyBase:Gene Report | Gene Report]] | ||
*[[FlyBase:Gene Group Report | Gene Group Report]] | *[[FlyBase:Gene Group Report | Gene Group Report]] | ||
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*[[FlyBase:Interaction Report | Interaction Report]] | *[[FlyBase:Interaction Report | Interaction Report]] | ||
*[[FlyBase:Natural Transposon Report | Natural Transposon Report]] | *[[FlyBase:Natural Transposon Report | Natural Transposon Report]] | ||
| + | *[[FlyBase:Pathway_Report | Pathway Report]] | ||
*[[FlyBase:Person Report | Person Report]] | *[[FlyBase:Person Report | Person Report]] | ||
*[[FlyBase:Polypeptide Report | Polypeptide Report]] | *[[FlyBase:Polypeptide Report | Polypeptide Report]] | ||
| Line 70: | Line 72: | ||
*[[FlyBase:Gene Ontology (GO) Annotation | Gene Ontology (GO) Annotation]] | *[[FlyBase:Gene Ontology (GO) Annotation | Gene Ontology (GO) Annotation]] | ||
*[[FlyBase:Nontraditional alleles | Nontraditional alleles]] | *[[FlyBase:Nontraditional alleles | Nontraditional alleles]] | ||
| − | *[[FlyBase:Vectors and Constructs | Vectors and Constructs]] | + | *[[FlyBase:Vectors and Constructs | Comonly used Vectors and Constructs]] |
== '''Tools and Downloads Documentation''' == | == '''Tools and Downloads Documentation''' == | ||
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*[[FlyBase:Vocabularies Tool | Vocabularies Tool]] | *[[FlyBase:Vocabularies Tool | Vocabularies Tool]] | ||
| − | '''Genomic/Map | + | '''Genomic/Map Tools Help |
''' | ''' | ||
* BLAST | * BLAST | ||
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* [[FlyBase:JBrowse | FlyBase JBrowse Help]] | * [[FlyBase:JBrowse | FlyBase JBrowse Help]] | ||
* [[FlyBase:JBrowse Tracks | JBrowse Tracks]] | * [[FlyBase:JBrowse Tracks | JBrowse Tracks]] | ||
| + | * [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]] | ||
| + | * [[FlyBase:Complete list of GBrowse/JBrowse Track Differences | Complete list of GBrowse/JBrowse Data Track Differences]] | ||
| + | |||
'''Retrieve/Convert Tools Help''' | '''Retrieve/Convert Tools Help''' | ||
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*[[FlyBase:Nomenclature | Nomenclature]] | *[[FlyBase:Nomenclature | Nomenclature]] | ||
*[[FlyBase:Links to and from FlyBase | Links to and from FlyBase]] | *[[FlyBase:Links to and from FlyBase | Links to and from FlyBase]] | ||
| + | *[[FlyBase:FlyBase Website Access Fee FAQ | FlyBase Website Access Fee FAQ]] | ||
*[[FlyBase:Community Advisory Group | FlyBase Community Advisory Group]] | *[[FlyBase:Community Advisory Group | FlyBase Community Advisory Group]] | ||
*[[FlyBase:FlyBase Guides: Pamphlets, Powerpoints, and Posters | FlyBase Guides: Pamphlets, Powerpoints, and Posters]] | *[[FlyBase:FlyBase Guides: Pamphlets, Powerpoints, and Posters | FlyBase Guides: Pamphlets, Powerpoints, and Posters]] | ||
| − | *[[FlyBase: | + | *[[FlyBase:Fly Board| Fly Board]] |
Revision as of 20:29, 20 March 2019
Video Tutorials
- FlyBase Video Tutorials on YouTube organized into four playlists.
Basic navigation series
- How to find all data related to a gene
- How to generate an excel file of all alleles of a gene
- Finding related genes in FlyBase: Gene Groups
- Finding related genes/alleles in FlyBase: Vocabularies
- Finding related genes in FlyBase: The Gene Ontology
- Gene Snapshots in FlyBase
- Finding genes with similar phenotypes
Tools series
- RNA-Seq Part I: Using GBrowse
- RNA-Seq Part II: Using RNA-Seq Profile Search
- RNA Seq Part III: Searching for Similarly Expressed Genes
- Finding related genes/alleles in FlyBase: Vocabularies
- Using the Orthology search tool
- Finding related genes in FlyBase: The Gene Ontology
- Finding genes with similar phenotypes
RNA-Seq series
- RNA-Seq Part I: Using GBrowse
- RNA-Seq Part II: Using RNA-Seq Profile Search
- RNA Seq Part III: Searching for Similarly Expressed Genes
FlyBase Guidelines
Report Help
Field by Field guides to FlyBase Reports
- All Reports
- Aberration Report
- Allele Report
- Balancer/Genotype variant Report
- Cell Line Report
- Clone Report
- CV (Controlled Vocabulary) Term Report
- Dataset/Collection Report
- Experimental Tool Report
- Gene Report
- Gene Group Report
- Human Disease Model Report
- Image Report
- Insertion Report
- Interaction Report
- Natural Transposon Report
- Pathway Report
- Person Report
- Polypeptide Report
- Recombinant Construct Report
- Reference Report
- Sequence Feature Report
- Strain Report
- Stock Report
- Transcript Report
Curation Documentation
- Controlled Vocabularies used by FlyBase
- Gene Model Annotation Guidelines
- Gene Ontology (GO) Annotation
- Nontraditional alleles
- Comonly used Vectors and Constructs
Tools and Downloads Documentation
Tools Overview
Query Tools Help
Genomic/Map Tools Help
- BLAST
- CytoSearch
- Feature Mapper
- FlyBase GBrowse Help
- GBrowse Tracks
- FlyBase JBrowse Help
- JBrowse Tracks
- Feature differences between JBrowse and GBrowse on FlyBase
- Complete list of GBrowse/JBrowse Data Track Differences
Retrieve/Convert Tools Help
RNA-Seq Tools Help
Downloads
Information for Authors
- Author Guidelines
- Citing FlyBase
- Fast Track Your Paper
- FlyBase Community
- Gene Snapshots
- Personal Communications to FlyBase