Difference between revisions of "FlyBase:FlyBase Help Index"

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== '''Video Tutorials''' ==
 
== '''Video Tutorials''' ==
  
*[https://www.youtube.com/user/FlyBaseDB FlyBase Video Tutorials]
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*[https://www.youtube.com/channel/UCG-KSNq46vkezAwbrVQojYA/videos FlyBase Video Tutorials] on YouTube organized into four playlists.
  
== '''Data Documentation''' ==
+
'''Basic navigation series
 +
'''
 +
*[https://www.youtube.com/watch?v=OlHv3zWt5cw How to find all data related to a gene]
 +
*[https://www.youtube.com/watch?v=xACOH8SYpoQ&t=60s How to generate an excel file of all alleles of a gene]
 +
*[https://www.youtube.com/watch?v=GQ_2X29Gx-E Finding related genes in FlyBase: Gene Groups]
 +
*[https://www.youtube.com/watch?v=jgCON15SiRo Finding related genes/alleles in FlyBase: Vocabularies]
 +
*[https://www.youtube.com/watch?v=XFCR8BRfGp0 Finding related genes in FlyBase: The Gene Ontology]
 +
*[https://www.youtube.com/watch?v=6IDlJGXdIP8 Gene Snapshots in FlyBase]
 +
*[https://www.youtube.com/watch?v=hZgsDPypZvk Finding genes with similar phenotypes]
 +
 
 +
'''Tools series
 +
'''
 +
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
 +
*[https://www.youtube.com/watch?v=Ho_PZ4XB8y8&t=17s RNA-Seq Part II: Using RNA-Seq Profile Search]
 +
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
 +
*[https://www.youtube.com/watch?v=jgCON15SiRo Finding related genes/alleles in FlyBase: Vocabularies]
 +
*[https://www.youtube.com/watch?v=JsNyrNG28M0 Using the Orthology search tool]
 +
*[https://www.youtube.com/watch?v=XFCR8BRfGp0 Finding related genes in FlyBase: The Gene Ontology]
 +
*[https://www.youtube.com/watch?v=hZgsDPypZvk Finding genes with similar phenotypes]
 +
 
 +
'''RNA-Seq series
 +
'''
 +
*[https://www.youtube.com/watch?v=KpJVkopUBDM&t=107s RNA-Seq Part I: Using GBrowse]
 +
*[https://www.youtube.com/watch?v=Ho_PZ4XB8y8&t=17s RNA-Seq Part II: Using RNA-Seq Profile Search]
 +
*[https://www.youtube.com/watch?v=mcMpRxeX-KY RNA Seq Part III: Searching for Similarly Expressed Genes]
 +
 
 +
'''FlyBase Guidelines
 +
'''
 +
*[https://www.youtube.com/watch?v=HsoWqclXMng Author Guidelines]
 +
*[https://www.youtube.com/watch?v=16SGlcASOL4 How to cite FlyBase]
  
'''Curation Conventions'''
+
== '''Report Help''' ==
*[[FlyBase:Controlled vocabularies used by FlyBase | Controlled vocabularies used by FlyBase]]
 
*[[FlyBase:Nontraditional alleles | Nontraditional alleles]]
 
*[[FlyBase:Vectors and Constructs | Vectors and Constructs]]
 
*[[FlyBase:Gene Ontology (GO) Annotation | Gene Ontology (GO) Annotation]]
 
  
 
'''Field by Field guides to FlyBase Reports'''
 
'''Field by Field guides to FlyBase Reports'''
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*[[FlyBase:Allele Report | Allele Report]]
 
*[[FlyBase:Allele Report | Allele Report]]
 
*[[FlyBase:Balancer/Genotype variant Report | Balancer/Genotype variant Report]]
 
*[[FlyBase:Balancer/Genotype variant Report | Balancer/Genotype variant Report]]
 +
*[[FlyBase:Cell Line Report | Cell Line Report]]
 
*[[FlyBase:Clone Report | Clone Report]]
 
*[[FlyBase:Clone Report | Clone Report]]
*[[FlyBase:Cell Line Report | Cell Line Report]]
+
*[[FlyBase:Vocabularies | CV (Controlled Vocabulary) Term Report]]
 +
*[[FlyBase:Dataset-Collection Report | Dataset/Collection Report]]
 
*[[FlyBase:Gene Report | Gene Report]]
 
*[[FlyBase:Gene Report | Gene Report]]
 +
*[[FlyBase:Gene Group Report | Gene Group Report]]
 
*[[FlyBase:Human Disease Report | Human Disease Model Report]]
 
*[[FlyBase:Human Disease Report | Human Disease Model Report]]
 
*[[FlyBase:Image Report | Image Report]]
 
*[[FlyBase:Image Report | Image Report]]
 
*[[FlyBase:Insertion Report | Insertion Report]]
 
*[[FlyBase:Insertion Report | Insertion Report]]
 
*[[FlyBase:Interaction Report | Interaction Report]]
 
*[[FlyBase:Interaction Report | Interaction Report]]
*[[FlyBase:Large Dataset Metadata Report | Large Dataset Metadata Report]]
 
 
*[[FlyBase:Natural Transposon Report | Natural Transposon Report]]
 
*[[FlyBase:Natural Transposon Report | Natural Transposon Report]]
 
*[[FlyBase:Person Report | Person Report]]
 
*[[FlyBase:Person Report | Person Report]]
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*[[FlyBase:Stock Report | Stock Report]]
 
*[[FlyBase:Stock Report | Stock Report]]
 
*[[FlyBase:Transcript Report | Transcript Report]]
 
*[[FlyBase:Transcript Report | Transcript Report]]
*[[FlyBase:Vocabularies | Vocabularies Term Report]]
 
  
'''Computed Fields'''
+
*[[FlyBase:Computed cytological data | Computed Cytological data]]
*[[FlyBase:Computed Feature type of genes | Computed Feature type of genes]]
+
 
*[[FlyBase:Computed cytological data | Computed cytological data]]
+
== '''Curation Documentation''' ==
 +
 
 +
*[[FlyBase:Controlled vocabularies used by FlyBase | Controlled Vocabularies used by FlyBase]]
 +
*[[FlyBase:Gene Model Annotation Guidelines | Gene Model Annotation Guidelines]]
 +
*[[FlyBase:Gene Ontology (GO) Annotation | Gene Ontology (GO) Annotation]]
 +
*[[FlyBase:Nontraditional alleles | Nontraditional alleles]]
 +
*[[FlyBase:Vectors and Constructs | Vectors and Constructs]]
  
'''Downloads'''
+
== '''Tools and Downloads Documentation''' ==
*[[FlyBase:Downloads Overview | Downloads Overview]]
 
  
== '''Tools Documentation''' ==
+
'''Tools Overview'''
 +
*[[FlyBase:Tools_Overview | Tools Overview]]
  
 
'''Query Tools Help
 
'''Query Tools Help
 
'''
 
'''
 
*[[FlyBase:Tools_Overview#Jump_to_Gene | Jump to Gene]]
 
*[[FlyBase:Tools_Overview#Jump_to_Gene | Jump to Gene]]
*[[FlyBase:QuickSearch | FlyBase QuickSearch]]
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*[http://{{flybaseorg}}/cgi-bin/qb.pl QueryBuilder]
*[http://beta.flybase.org/cgi-bin/qb.pl QueryBuilder]
+
*[[FlyBase:QuickSearch | QuickSearch]]
*[http://beta.flybase.org/vocabularies Vocabularies]
+
*[[FlyBase:Vocabularies Tool | Vocabularies Tool]]
  
 
'''Genomic/Map tools Help
 
'''Genomic/Map tools Help
 
'''
 
'''
 
* BLAST
 
* BLAST
 +
* [[FlyBase:CytoSearch | CytoSearch]]
 +
* [[FlyBase:Feature Mapper | Feature Mapper]]
 
* [[FlyBase:GBrowse | FlyBase GBrowse Help]]
 
* [[FlyBase:GBrowse | FlyBase GBrowse Help]]
 
* [[FlyBase:GBrowse Tracks | GBrowse Tracks]]
 
* [[FlyBase:GBrowse Tracks | GBrowse Tracks]]
 
* [[FlyBase:JBrowse | FlyBase JBrowse Help]]
 
* [[FlyBase:JBrowse | FlyBase JBrowse Help]]
 
* [[FlyBase:JBrowse Tracks | JBrowse Tracks]]
 
* [[FlyBase:JBrowse Tracks | JBrowse Tracks]]
* [http://beta.flybase.org/cytosearrch CytoSearch]
 
* [http://beta.flybase.org/featuremapper FeatureMapper]
 
  
 
'''Retrieve/Convert Tools Help'''
 
'''Retrieve/Convert Tools Help'''
* [http://beta.flybase.org/batchdownload Batch Download]
+
* [[FlyBase:Batch Download | Batch Download]]
* Coordinate Converter
+
* [[FlyBase:Coordinate Converter | Coordinate Converter]]
* ID Converter  
+
* [[FlyBase:ID_Converter | ID Converter ]]
 
* Sequence Downloader
 
* Sequence Downloader
  
 
'''RNA-Seq Tools Help'''
 
'''RNA-Seq Tools Help'''
*[[FlyBase:Tools Overview |Tools Overview]]
+
* [[FlyBase:RNA-Seq Overview | RNA-Seq Overview]]
*[http://beta.flybase.org/rnaseq/profile_search RNA-Seq Profile]
+
* [http://{{flybaseorg}}/rnaseq/region RNA-Seq by Region]
*[http://beta.flybase.org/rnaseq/simsearch RNA-Seq Similarity]
+
* [http://{{flybaseorg}}/rnaseq/profile_search RNA-Seq Profile]
*[http://beta.flybase.org/rnaseq/region RNA-Seq by Region]
+
* [http://{{flybaseorg}}/rnaseq/simsearch RNA-Seq Similarity]
 +
 
 +
'''Downloads'''
 +
*[[FlyBase:Downloads Overview | Downloads Overview]]
  
== '''Author Help''' ==
+
== '''Information for Authors''' ==
  
 
*[[FlyBase:Author Guidelines | Author Guidelines]]
 
*[[FlyBase:Author Guidelines | Author Guidelines]]
 +
*[[FlyBase:About#Citing_FlyBase | Citing FlyBase]]
 +
*Fast Track Your Paper
 +
*[http://beta.flybase.org/community FlyBase Community]
 +
*[[FlyBase:Gene Snapshots | Gene Snapshots]]
 
*[[FlyBase:Personal communications to FlyBase | Personal Communications to FlyBase]]
 
*[[FlyBase:Personal communications to FlyBase | Personal Communications to FlyBase]]
 +
 +
== '''Other Help''' ==
 +
 +
*[[FlyBase:New to Flies? | New to Flies?]]
 
*[[FlyBase:Nomenclature | Nomenclature]]
 
*[[FlyBase:Nomenclature | Nomenclature]]
 
*[[FlyBase:Links to and from FlyBase | Links to and from FlyBase]]
 
*[[FlyBase:Links to and from FlyBase | Links to and from FlyBase]]
 +
*[[FlyBase:Community Advisory Group | FlyBase Community Advisory Group]]

Latest revision as of 19:51, 19 January 2018

Video Tutorials

Basic navigation series

Tools series

RNA-Seq series

FlyBase Guidelines

Report Help

Field by Field guides to FlyBase Reports

Curation Documentation

Tools and Downloads Documentation

Tools Overview

Query Tools Help

Genomic/Map tools Help

Retrieve/Convert Tools Help

RNA-Seq Tools Help

Downloads

Information for Authors

Other Help