FlyBase:Drosophila Online Resources

From FlyBase Wiki
Jump to navigation Jump to search

Atlases, Images and Videos

CRISPRs and TALENs

Data Repositories

Drosophila Genomes Data and Metadata

Gene Expression Databases and Tools

Gene Groups

General Bioinformatics Tools

Genome Sequencing Projects

Human Disease: Drosophila Models and Orthologous Genes

Interaction and Pathway Databases

Laboratory Resources

Miscellaneous

Non-coding (ncRNA) Databases and Tools

General

  • NONCODE, An integrated knowledge database dedicated to ncRNAs, especially lncRNAs (last updated 2017):
    NONCODE, Tsinghua University and Chinese Academy of Sciences, Beijing, China
  • NONCODE, Compiles data and annotations about non-coding RNAs for various species. NONCODE is an open repository curated from scientific literature and public databases which focuses mainly on long non-coding RNAs (lncRNAs). It intends to supply a detailed information for each entry encompassing sequence, structure, expression, function, conservation, or disease relevance. It also provides associated tools such as an ID converter and a blast tool:
    NONCODE, Multiple institutions, Beijing, China
  • Rfam, A collection of RNA sequence families of structural RNAs including non-coding RNA genes as well as cis-regulatory elements (last updated 2017):
    Rfam, EMBL-EBI, Hinxton, UK
  • RNAcentral, Integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases (last updated 2017):
    RNAcentral, EMBL-EBI, Hinxton, UK

lncRNA

miRNA

General

NOTE - mirBase Release 21 (June 2014) uses old reference genome assemblies for D. melanogaster (Dmel_Release_5), D. simulans (Dsim_Release_1) and D. pseudoobscura (Dpse_Release_2). Linkouts from D. melanogaster miRNA genes to the Ensembl Genome browser (which displays Dmel_Release_6) will point to the old "Release_5" coordinates, which will be off the mark for many genes, especially those on X, 2R, 3R and 4 chromosomes.

miRNA Target Prediction

Validated miRNA Targets

Comparative miRNA Analysis

rRNA

tRNA

snoRNA

SRP RNA

Ontology Resources

Orthology Predictions

Phylogenetic Comparison Tools

Population Biology and Polymorphism Resources

Protein Analysis

Public Education

RNAi

Sequence Analysis

Single Cell RNA-seq

Taxonomy

Transcription Regulation Databases and Tools

Suggest a tool or resource