Difference between revisions of "FlyBase:Drosophila Online Resources"

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=Data and Metadata for Drosophila Genomes=
 
=Data and Metadata for Drosophila Genomes=
 
* <b>List of Drosophila reference genome assemblies</b> at FlyBase, NCBI and UCSC. [[File:DrosophilaGenomeAssemblies.xls]] (spreadsheet) ''Updated June 17, 2015''
 
* <b>List of Drosophila reference genome assemblies</b> at FlyBase, NCBI and UCSC. [[File:DrosophilaGenomeAssemblies.xls]] (spreadsheet) ''Updated June 17, 2015''
* <b>''D. albomicans'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/2712/ D. albomicans Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000298335 D. albomicans Genome Assembly Report, ENA, UK]
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* <b>''D. albomicans'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/2712/ D. albomicans Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000298335 D. albomicans Genome Assembly Report, ENA, UK]
* <b>''D. ananassae'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/244/ D. ananassae Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005115 D. ananassae Genome Assembly Report, ENA, UK]
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* <b>''D. ananassae'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/244/ D. ananassae Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005115 D. ananassae Genome Assembly Report, ENA, UK]
* <b>''D. biarmipes'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/3499/ D. biarmipes Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000233415 D. biarmipes Genome Assembly Report, ENA, UK]
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* <b>''D. biarmipes'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/3499/ D. biarmipes Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000233415 D. biarmipes Genome Assembly Report, ENA, UK]
* <b>''D. bipectinata'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/3489/ D. bipectinata Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000236285 D. bipectinata Genome Assembly Report, ENA, UK]
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* <b>''D. bipectinata'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/3489/ D. bipectinata Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000236285 D. bipectinata Genome Assembly Report, ENA, UK]
* <b>''D. erecta'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/250/ D. erecta Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005135 D. erecta Genome Assembly Report, ENA, UK]
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* <b>''D. erecta'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/250/ D. erecta Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005135 D. erecta Genome Assembly Report, ENA, UK]
* <b>''D. elegans'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/3490 D. elegans Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000224195 D. elegans Genome Assembly Report, ENA, UK]
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* <b>''D. elegans'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/3490 D. elegans Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000224195 D. elegans Genome Assembly Report, ENA, UK]
* <b>''D. eugracilis'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/6863/ D. eugracilis Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000236325 D. eugracilis Genome Assembly Report, ENA, UK]
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* <b>''D. eugracilis'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/6863/ D. eugracilis Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000236325 D. eugracilis Genome Assembly Report, ENA, UK]
* <b>''D. ficusphila'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/3491/ D. ficusphila Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000220665 D. ficusphila Genome Assembly Report, ENA, UK]
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* <b>''D. ficusphila'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/3491/ D. ficusphila Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000220665 D. ficusphila Genome Assembly Report, ENA, UK]
* <b>''D. grimshawi'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/257/ D. grimshawi Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005155 D. grimshawi Genome Assembly Report, ENA, UK]
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* <b>''D. grimshawi'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/257/ D. grimshawi Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005155 D. grimshawi Genome Assembly Report, ENA, UK]
* <b>''D. kikkawai'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/3492/ D. kikkawai Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000224215 D. kikkawai Genome Assembly Report, ENA, UK]
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* <b>''D. kikkawai'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/3492/ D. kikkawai Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000224215 D. kikkawai Genome Assembly Report, ENA, UK]
* <b>''D. melanogaster'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/47/ D. melanogaster Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000001215 D. melanogaster Genome Assembly Report, ENA, UK]
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* <b>''D. melanogaster'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/47/ D. melanogaster Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000001215 D. melanogaster Genome Assembly Report, ENA, UK]
* <b>''D. miranda'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/10915/ D. miranda Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000269505 D. miranda Genome Assembly Report, ENA, UK]
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* <b>''D. miranda'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/10915/ D. miranda Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000269505 D. miranda Genome Assembly Report, ENA, UK]
* <b>''D. mojavensis'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/259/ D. mojavensis Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005175 D. mojavensis Genome Assembly Report, ENA, UK]
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* <b>''D. mojavensis'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/259/ D. mojavensis Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005175 D. mojavensis Genome Assembly Report, ENA, UK]
* <b>''D. persimilis'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/265/ D. persimilis Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005195 D. persimilis Genome Assembly Report, ENA, UK]
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* <b>''D. persimilis'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/265/ D. persimilis Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005195 D. persimilis Genome Assembly Report, ENA, UK]
* <b>''D. pseudoobscura'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/219/ D. pseudoobscura Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000001765 D. pseudoobscura Genome Assembly Report, ENA, UK]
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* <b>''D. pseudoobscura'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/219/ D. pseudoobscura Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000001765 D. pseudoobscura Genome Assembly Report, ENA, UK]
* <b>''D. rhopaloa'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/6853/ D. rhopaloa Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000236305 D. rhopaloa Genome Assembly Report, ENA, UK]
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* <b>''D. rhopaloa'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/6853/ D. rhopaloa Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000236305 D. rhopaloa Genome Assembly Report, ENA, UK]
* <b>''D. sechellia'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/271/ D. sechellia Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005215 D. sechellia Genome Assembly Report, ENA, UK]
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* <b>''D. sechellia'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/271/ D. sechellia Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005215 D. sechellia Genome Assembly Report, ENA, UK]
* <b>''D. simulans'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/200/ D. simulans Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000259045 D. simulans Genome Assembly Report, ENA, UK]
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* <b>''D. simulans'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/200/ D. simulans Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000259045 D. simulans Genome Assembly Report, ENA, UK]
* <b>''D. suzukii'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/18317/ D. suzukii Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000472105 D. suzukii Genome Assembly Report, ENA, UK]
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* <b>''D. suzukii'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/18317/ D. suzukii Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000472105 D. suzukii Genome Assembly Report, ENA, UK]
* <b>''D. takahashii'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/3493/ D. takahashii Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000224235 D. takahashii Genome Assembly Report, ENA, UK]
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* <b>''D. takahashii'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/3493/ D. takahashii Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000224235 D. takahashii Genome Assembly Report, ENA, UK]
* <b>''D. virilis'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/261/ D. virilis Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005245 D. virilis Genome Assembly Report, ENA, UK]
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* <b>''D. virilis'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/261/ D. virilis Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005245 D. virilis Genome Assembly Report, ENA, UK]
* <b>''D. willistoni'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/251/ D. willistoni Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005925 D. willistoni Genome Assembly Report, ENA, UK]
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* <b>''D. willistoni'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/251/ D. willistoni Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005925 D. willistoni Genome Assembly Report, ENA, UK]
* <b>''D. yakuba'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/148/ D. yakuba Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005975 D. yakuba Genome Assembly Report, ENA, UK]]
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* <b>''D. yakuba'' Genome</b>:<br />[http://www.ncbi.nlm.nih.gov/genome/genomes/148/ D. yakuba Organism Overview, NCBI, USA]<br />[http://www.ebi.ac.uk/ena/data/view/GCA_000005975 D. yakuba Genome Assembly Report, ENA, UK]]
  
 
=Gene Expression Databases and Tools=
 
=Gene Expression Databases and Tools=

Revision as of 16:36, 15 July 2015

Atlases, Images and Videos

CRISPRs and TALENs

Data Repositories

Data and Metadata for Drosophila Genomes

Gene Expression Databases and Tools

Gene Groups

General Bioinformatics Tools

Genome Sequencing Projects

Human Disease: Drosophila Models and Orthologous Genes

Interaction and Pathway Databases

miRNA and ncRNA Databases and Tools

NOTE - mirBase Release 21 (June 2014) uses old reference genome assemblies for D. melanogaster (Dmel_Release_5), D. simulans (Dsim_Release_1) and D. pseudoobscura (Dpse_Release_2). Linkouts from D. melanogaster miRNA genes to the Ensembl Genome browser (which displays Dmel_Release_6) will point to the old "Release_5" coordinates, which will be off the mark for many genes, especially those on X, 2R, 3R and 4 chromosomes.

Miscellaneous

Phylogenetic Comparison Tools

Population Biology and Polymorphism Resources

Protein Analysis

Public Education

RNAi

Sequence Analysis

Taxonomy

Transcription Regulation Databases and Tools

Suggest a tool or resource