Difference between revisions of "FlyBase:Drosophila Online Resources"

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* <b>Protege</b>, browser for OWL ontologies:<br />[http://protege.stanford.edu/products.php, Protege, Stanford Center for Biomedical Informatics Research, Stanford University School of Medicine, USA]
 
* <b>Protege</b>, browser for OWL ontologies:<br />[http://protege.stanford.edu/products.php, Protege, Stanford Center for Biomedical Informatics Research, Stanford University School of Medicine, USA]
 
* <b>Disease Ontology</b>, ontology of disease terms:<br />[http://disease-ontology.org/ Disease Ontology]
 
* <b>Disease Ontology</b>, ontology of disease terms:<br />[http://disease-ontology.org/ Disease Ontology]
 +
 +
=Orthologs=
 +
* <b>DIOPT</b>, DRSC Integrative Ortholog Prediction Tool:<br />[http://www.flyrnai.org/cgi-bin/DRSC_orthologs.pl DIOPT, DRSC, Harvard Medical School, Boston, MA, USA]
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* <b>DIOPT-DIST: DIOPT Diseases and Traits</b>, DRSC Disease Gene Query Tool:<br />[http://www.flyrnai.org/cgi-bin/DRSC_DG_query.pl DIOPT-DIST, DRSC, Harvard Medical School, Boston, MA, USA]]
 +
* <b>OrthoDB</b>, The Hierarchical Catalog of Orthologs:<br />[http://orthodb.org/ Zdobnov's Computational Evolutionary Genomics group, University of Geneva, Geneva, Switzerland]
  
 
=Phylogenetic Comparison Tools=
 
=Phylogenetic Comparison Tools=

Revision as of 20:14, 8 December 2015

Atlases, Images and Videos

CRISPRs and TALENs

Data Repositories

Data and Metadata for Drosophila Genomes

Gene Expression Databases and Tools

Gene Groups

General Bioinformatics Tools

Genome Sequencing Projects

Human Disease: Drosophila Models and Orthologous Genes

Interaction and Pathway Databases

Laboratory Resources

miRNA and ncRNA Databases and Tools

NOTE - mirBase Release 21 (June 2014) uses old reference genome assemblies for D. melanogaster (Dmel_Release_5), D. simulans (Dsim_Release_1) and D. pseudoobscura (Dpse_Release_2). Linkouts from D. melanogaster miRNA genes to the Ensembl Genome browser (which displays Dmel_Release_6) will point to the old "Release_5" coordinates, which will be off the mark for many genes, especially those on X, 2R, 3R and 4 chromosomes.

Miscellaneous

Ontology Resources

Orthologs

Phylogenetic Comparison Tools

Population Biology and Polymorphism Resources

Protein Analysis

Public Education

RNAi

Sequence Analysis

Taxonomy

Transcription Regulation Databases and Tools

Suggest a tool or resource