FlyBase:Drosophila Online Resources

Comparative Analysises and Genome Databases

• Assembly/Alignment/Annotation of 12 related Drosophila species:
  Assembly/Alignment/Annotation, LBNL, USA
• BDGP Single Nucleotide Polymorphism (SNP) Project:
  Berkeley Drosophila Genome Project, University of California, Berkeley, USA
• Berkeley Drosophila Genome Project (BDGP):
  BDGP, University of California, Berkeley, USA
• BDTNP, ChIP/chip in vivo DNA binding data:
  Berkeley Drosophila Transcription Network Project, University of California, Berkeley, USA
• CluSTr protein sequence similarity analysis of Drosophila:
  CluSTr proteome analysis, EBI, UK
• D. pseudoobscura genome project:
  Human Genome Sequencing Center, Baylor College of Medicine, USA
• D. simulans genome project:
  simulans White 501 Genome Sequencing Center, Washington University, USA
• D. yakuba genome project:
  yakuba Genome Sequencing Center, Washington University, USA
• D. melanogaster UCSC Genome Browser Gateway:
  melanogaster&db=0 University of California, Santa Cruz, USA
• DDBJ, the DNA Data Bank of Japan:
  DDBJ, National Institute of Genetics, Mishima, Japan
• DNase I Footprint Database:
  University of Manchester Bioinformatics Resources, University of Manchester, UK
• Drosophila Heterochromatin Genome Project (DHGP):
  DHGP, Lawrence Berkeley National Laboratory, USA
• Drosophila melanogaster Exon Database (DEDB):
  DEDB, National University of Singapore
• Drosophila Polymorphism Database:
  Drosophila Polymorphism Database, Univ. Autònoma de Barcelona, Spain
• Drosophila Population Genomic Project (DPGP):
  DPGP, University of California, Davis, USA
• Drosophila simulans and yakuba sequencing projects:
  DPGP, University of California, Davis, USA
• Drosophilidae Taxonomic Database:
  Drosophilidae Taxonomic Database, Japan
• Drosophilidae Taxonomy - Collection of Papers:
  Japan Drosophila Database (JDD) on Taxonomy, Japan
• DRSC, Drosophila RNAi Screening Center:
  DRSC, Harvard Medical School, Boston, MA, USA
• EMBL Nucleotide Sequence Database:
  EMBL Nucleotide Sequence Database, EBI, Cambridge, UK
• EPD, the Eukaryotic Promoter Database:
  EPD, Epalinges s/Lausanne, Switzerland
• euGenes, Genomic Information for Eukaryotic Organisms, including Drosophila:
  euGenes, Indiana University, USA
• EvoPrinter, Identification of Evolutionarily Resilient DNA Sequences
  NINDS, NIH, Bethesda MD, USA
• FLIGHT, Fly database for the Integration of Genomic and High-Throughput data:
  FLIGHT Database, Ludwig Institute for Cancer Research, London, UK
• FlyAtlas, the Drosophila adult gene expression atlas:
  FlyAtlas, University of Glasgow, UK
• FlyMine, an integrated database for Drosophila & Anopheles genomics:
  University of Cambridge, United Kingdom
• FlyPhenomics, phenotypic differences between species of the D. melanogaster subgroup:
  FlyPhenomics, Paris, France
• FlySNP Project:
  FlySNP, Austrian Academy of Sciences, Austria
• GenBank,the NIH genetic sequence database:
  GenBank, NCBI, Bethesda, MD USA
• GenomeRNAi, Heidelberg, a database of RNA interference (RNAi) screens in cultured Drosophila cells:
  GenomeRNAi, DKFZ, Heidelberg, Germany
• GEO, NCBI's Gene Expression Omnibus:
  GEO, NCBI, Bethesda, MD USA
• GPCRDB, information system for G protein-coupled receptors (GPCRs):
  GPCRDB, The GPCRDB (G Protein-Coupled Receptor Data Base) partnership
• Homophila, Human Disease to Drosophila Gene Database:
  Homophila, San Diego, USA
• InParanoid, Eukaryotic Ortholog Groups:
  InParanoid, Karolinska Institute, Sweden
• InterPro protein domain analysis of Drosophila:
  InterPro proteome analysis, EBI, UK
• MANTiS a phylogenetic framework for multi-species genome comparisons:
  MANTiS, Université Libre de Bruxelles, Belgium
• MEROPS, an information resource for peptidases:
  MEROPS, The Sanger Institute, Cambridge, UK
• miRBase, microRNA data:
  miRBase, The Sanger Institute, Cambridge, UK
• MitoDrome, Drosophila melanogaster nuclear genes encoding for mitochondrial proteins:
  MitoDrome, Bari, Italy
• Mitotic Spindle Assembly Database:
  Genes Required for Mitotic Spindle Assembly in S2 cells, University of California, San Francisco, USA
• NHGRI Drosophila Genome Sequencing Proposals, Status of Sequencing:
  National Human Genome Research Institute, Bethesda, MD, USA
• Panther protein classification system:
  Panther Protein Classification System, Applied Biosystems & Celera, USA
• PDB, Protein Data Bank:
  PDB, The Research Collaboratory for Structural Bioinformatics (RCSB) consortium
• PhospoPep - phosphorylation site data from D. melanogaster cell lines:
  The Aebersold group at the ETH in collaboration with the FGCZ in Switzerland, and the ISB, USA.
• Proteome analysis of Drosophila:
  Proteome analysis, EBI, UK
• PubMed, Biomedical literature citations and abstracts:
  PubMed, NCBI, Bethesda, MD USA
• REDfly, Regulatory Element Database for Drosophila:
  REDfly, University at Buffalo, New York, USA
• Rfam, RNA families database of alignments and CMs:
  Rfam, the Sanger Institute, Cambridge, UK and Janelia Farm, Ashburn, VA, USA
• Sebida, Sex Bias Database:
  Sebida, MPI Martinsried, Germany
• TaxoDros, the database on Taxonomy of Drosophilidae:
  TaxoDros, University of Zurich, Switzerland
• The Drosophila Transcription Factor Database:
  FlyTF.org, MRC Cambridge, UK
• The McGill Drosophila melanogaster Genome Project:
  McGill Drosophila Genome Project, Canada
• TRANSFAC, A database of transcription factors and their binding sites:
  TRANSFAC, Braunschweig, Germany
• TransTerm, a Translational Signal Database:
  TransTerm, Dunedin, New Zealand
• UniProtKB, a comprehensive catalog of information on proteins:
  UniProtKB, The UniProt Consortium
• Whole genome comparative analysis of D. melanogaster and D. pseudoobscura:
  Whole genome analysis, LBNL, USA

Sequence Traces of Drosophila Genomes

• D. ananassae genomic sequence trace archives:
  ANANASSAE' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. erecta genomic sequence trace archives:
  ERECTA' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. grimshawi genomic sequence trace archives:
  GRIMSHAWI' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. melanogaster genomic sequence trace archives:
  MELANOGASTER' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. mojavensis genomic sequence trace archives:
  MOJAVENSIS' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. persimilis genomic sequence trace archives:
  PERSIMILIS' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. pseudoobscura genomic sequence trace archives:
  PSEUDOOBSCURA' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. sechellia genomic sequence trace archives:
  SECHELLIA' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. simulans genomic sequence trace archives:
  SIMULANS' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. virilis genomic sequence trace archives:
  VIRILIS' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. willistoni genomic sequence trace archives:
  WILLISTONI' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK
• D. yakuba genomic sequence trace archives:
  YAKUBA' NCBI Trace Archives, USA
  Ensembl FTP Trace Repository, EBI, UK