Difference between revisions of "FlyBase:Drosophila Online Resources"

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* UniProtKB, a comprehensive catalog of information on proteins:<br />[http://www.pir.uniprot.org/ UniProtKB, The UniProt Consortium]
 
* UniProtKB, a comprehensive catalog of information on proteins:<br />[http://www.pir.uniprot.org/ UniProtKB, The UniProt Consortium]
  
=RNA and RNAi Databases and Tools=
+
=RNA Databases and Tools=
* DRSC, Drosophila RNAi Screening Center:<br />[http://www.flyrnai.org/index.html DRSC, Harvard Medical School, Boston, MA, USA]
 
* GenomeRNAi, Heidelberg, a database of RNA interference (RNAi) screens in cultured Drosophila cells:<br />[http://www.dkfz.de/signaling2/rnai/index.php GenomeRNAi, DKFZ, Heidelberg, Germany]
 
 
* MinoTar, Predict microRNA Targets in Coding Sequence:<br />[http://www.flyrnai.org/cgi-bin/DRSC_MinoTar.pl MinoTar, DSRC, Boston, MA, USA]
 
* MinoTar, Predict microRNA Targets in Coding Sequence:<br />[http://www.flyrnai.org/cgi-bin/DRSC_MinoTar.pl MinoTar, DSRC, Boston, MA, USA]
 
* miRBase, microRNA data:<br />[http://www.mirbase.org/ miRBase, University of Manchester, UK]
 
* miRBase, microRNA data:<br />[http://www.mirbase.org/ miRBase, University of Manchester, UK]
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* miRNA_Targets:<br />[http://mamsap.it.deakin.edu.au/~amitkuma/mirna_targetsnew/index.html miRNA targets on full length mRNAs, Deakin University, Victoria, Australia]
 
* miRNA_Targets:<br />[http://mamsap.it.deakin.edu.au/~amitkuma/mirna_targetsnew/index.html miRNA targets on full length mRNAs, Deakin University, Victoria, Australia]
 
* Rfam, RNA families database of alignments and CMs:<br />[http://www.webcitation.org/getfile?fileid=db1c351a4c279e9cf9697bd2d1962097900701fb Rfam, Wellcome Trust Sanger Institute, Hinxton, UK and Janelia Farm, Ashburn, VA, USA]
 
* Rfam, RNA families database of alignments and CMs:<br />[http://www.webcitation.org/getfile?fileid=db1c351a4c279e9cf9697bd2d1962097900701fb Rfam, Wellcome Trust Sanger Institute, Hinxton, UK and Janelia Farm, Ashburn, VA, USA]
* TargetScanFly, Prediction of microRNA targets:<br />[http://www.targetscan.org/fly_12/ TargetScanFly, Whitehead Institute and MIT Dept. of Biology, USA]
+
* TargetScanFly, Prediction of microRNA targets:<br />[http://www.targetscan.org/fly_12/ TargetScanFly, Whitehead Institute and MIT Dept. of Biology, USA]]
* UP-TORR Fly, a tool for identifying updated targets of RNAi reagents: <br />[http://www.flyrnai.org/up-torr/ Updated Targets of RNAi Reagents, DRSC, Harvard Medical School, Boston, MA,USA]
+
 
 +
=RNAi=
 +
* DRSC, Drosophila RNAi Screening Center:<br />[http://www.flyrnai.org/index.html DRSC, Harvard Medical School, Boston, MA, USA]
 +
* GenomeRNAi, Heidelberg, a database of RNA interference (RNAi) screens in cultured Drosophila cells:<br />[http://www.dkfz.de/signaling2/rnai/index.php GenomeRNAi, DKFZ, Heidelberg, Germany]
 +
* TRiP, Transgenic RNAi Project: <br />[http://www.flyrnai.org/up-torr/ Updated Targets of RNAi Reagents, DRSC, Harvard Medical School, Boston, MA,USA]
 +
* UP-TORR Fly, a tool for identifying updated targets of RNAi reagents: <br />[http://www.flyrnai.org/TRiP-HOME.html Transgenic RNAi Project, DRSC, Harvard Medical School, Boston, MA,USA]
 
* VDRC, Vienna Drosophila Resource Center: <br />[http://stockcenter.vdrc.at/control/main Genome-wide transgenic Drosophila RNAi libraries, VDRC, Vienna, Austria]
 
* VDRC, Vienna Drosophila Resource Center: <br />[http://stockcenter.vdrc.at/control/main Genome-wide transgenic Drosophila RNAi libraries, VDRC, Vienna, Austria]
  

Revision as of 21:29, 24 November 2014

Atlases, Images and Videos

Data Repositories

Data and Metadata for Drosophila Genomes

Genome Sequencing Projects

Gene Expression Databases and Tools

General Bioinformatics Tools

Interaction and Pathway Databases

Miscellaneous

Phylogenetic Comparison Tools

Population Biology and Polymorphism Resources

Protein Analysis

RNA Databases and Tools

RNAi

Sequence Analysis

Taxonomy

Transcription Regulation Databases and Tools