Difference between revisions of "FlyBase:Drosophila Network Resources"

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(Sequence Analysis)
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=Sequence Analysis=
 
=Sequence Analysis=
* <span class="bold">Apollo</span>, a genome annotation viewer and editor: <br />[http://apollo.berkeleybop.org/current/index.html Apollo]
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* Apollo, a genome annotation viewer and editor: <br />[http://apollo.berkeleybop.org/current/index.html Apollo]
* <span class="bold">cis-analyst</span>, to search the Drosophila genome for clusters of binding sites: <br />[http://rana.lbl.gov/cis-analyst/ cis-analyst, USA]
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* cis-analyst, to search the Drosophila genome for clusters of binding sites: <br />[http://rana.lbl.gov/cis-analyst/ cis-analyst, USA]
* <span class="bold">FlyPrimerBank</span>, a comprehensive qPCR primer database for Drosophila: <br />[http://www.flyrnai.org/FlyPrimerBank FlyPrimerBank, USA]
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* FlyPrimerBank, a comprehensive qPCR primer database for Drosophila: <br />[http://www.flyrnai.org/FlyPrimerBank FlyPrimerBank, USA]
* <span class="bold">Gene-Finder for Drosophila:</span><br />[http://www.softberry.com/berry.phtml?topic=gfind&prg=FGENESH Gene Finding, FGENESH, SoftBerry]
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* Gene-Finder for Drosophila:<br />[http://www.softberry.com/berry.phtml?topic=gfind&prg=FGENESH Gene Finding, FGENESH, SoftBerry]
* <span class="bold">GenePalette</span>, a tool for genome sequence visualization and navigation: <br />[http://www.genepalette.org/ GenePalette, University of California, San Diego, USA]
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* GenePalette, a tool for genome sequence visualization and navigation: <br />[http://www.genepalette.org/ GenePalette, University of California, San Diego, USA]
* <span class="bold">Genie Gene finder for Drosophila:</span><br />[http://www.fruitfly.org/seq_tools/genie.html Genie, USA]
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* Genie Gene finder for Drosophila:<br />[http://www.fruitfly.org/seq_tools/genie.html Genie, USA]
* <span class="bold">miRNA, Target Gene Prediction:</span><br />[http://www.mirna.embl.de/ miRNA - Target Prediction, EMBL, Heidelberg, Germany]
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* miRNA, Target Gene Prediction:<br />[http://www.mirna.embl.de/ miRNA - Target Prediction, EMBL, Heidelberg, Germany]
* <span class="bold">miRNA_Targets:</span><br />[http://mamsap.it.deakin.edu.au/~amitkuma/mirna_targetsnew/index.html miRNA targets on full length mRNAs, Deakin University, Victoria, Australia]
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* miRNA_Targets:<br />[http://mamsap.it.deakin.edu.au/~amitkuma/mirna_targetsnew/index.html miRNA targets on full length mRNAs, Deakin University, Victoria, Australia]
* <span class="bold">Neural Network Promoter Prediction for Drosophila:</span><br />[http://www.fruitfly.org/seq_tools/promoter.html Neural Network Promoter Prediction, USA]
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* Neural Network Promoter Prediction for Drosophila:<br />[http://www.fruitfly.org/seq_tools/promoter.html Neural Network Promoter Prediction, USA]
* <span class="bold">PREdictor</span>, to identify Polycomb/Trithorax response elements: <br />[http://bibiserv.techfak.uni-bielefeld.de/predictor/ PREdictor, Bielefeld University, Germany]
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* PREdictor, to identify Polycomb/Trithorax response elements: <br />[http://bibiserv.techfak.uni-bielefeld.de/predictor/ PREdictor, Bielefeld University, Germany]
* <span class="bold">Splice Site Prediction for Drosophila:</span><br />[http://www.fruitfly.org/seq_tools/splice.html Splice Site Prediction, USA]
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* Splice Site Prediction for Drosophila:<br />[http://www.fruitfly.org/seq_tools/splice.html Splice Site Prediction, USA]
* <span class="bold">Stubb site</span>, to find clusters of cis-regulatory binding sites: <br />[http://stubb.rockefeller.edu/ Stubb web site, Rockefeller University, New York, USA]
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* Stubb site, to find clusters of cis-regulatory binding sites: <br />[http://stubb.rockefeller.edu/ Stubb web site, Rockefeller University, New York, USA]
* <span class="bold">Target Explorer</span>, to identify clusters of transcription factor binding sites: <br />[http://trantor.bioc.columbia.edu/Target_Explorer/ Target Explorer, Columbia University, New York, USA]
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* Target Explorer, to identify clusters of transcription factor binding sites: <br />[http://trantor.bioc.columbia.edu/Target_Explorer/ Target Explorer, Columbia University, New York, USA]
* <span class="bold">UP-TORR Fly</span>, a tool for identifying updated targets of RNAi reagents: <br />[http://www.flyrnai.org/up-torr/ Updated Targets of RNAi Reagents, USA]
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* UP-TORR Fly, a tool for identifying updated targets of RNAi reagents: <br />[http://www.flyrnai.org/up-torr/ Updated Targets of RNAi Reagents, USA]
  
 
=Atlases, Images, and Videos=
 
=Atlases, Images, and Videos=

Revision as of 15:00, 17 April 2014

Comparative Analyses and Genome Databases

Sequence Traces of Drosophila Genomes

Genetic and Protein Interaction Databases

Sequence Analysis

Atlases, Images, and Videos

Other