Difference between revisions of "FlyBase:Drosophila Network Resources"

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(Sequence Traces of Drosophila Genomes)
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* GPCRDB, information system for G protein-coupled receptors (GPCRs):<br />[http://www.gpcr.org/7tm/ GPCRDB, The GPCRDB (G Protein-Coupled Receptor Data Base) partnership]
 
* GPCRDB, information system for G protein-coupled receptors (GPCRs):<br />[http://www.gpcr.org/7tm/ GPCRDB, The GPCRDB (G Protein-Coupled Receptor Data Base) partnership]
  
=Sequence Traces of Drosophila Genomes=
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* Homophila, Human Disease to Drosophila Gene Database:<br />[http://superfly.ucsd.edu/homophila/ Homophila, San Diego, USA]
 
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* InParanoid, Eukaryotic Ortholog Groups:<br />[http://inparanoid.sbc.su.se/cgi-bin/index.cgi InParanoid, Karolinska Institute, Sweden]
* <span class="bold">''D. ananassae'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA ANANASSAE' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_ananassae Ensembl FTP Trace Repository, EBI, UK]
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* InterPro protein domain analysis of Drosophila:<br />[http://www.ebi.ac.uk/integr8/InterproAnalysisPage.do?orgProteomeID=17 InterPro proteome analysis, EBI, UK]
* <span class="bold">''D. erecta'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA ERECTA' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_erecta Ensembl FTP Trace Repository, EBI, UK]
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* MANTiS a phylogenetic framework for multi-species genome comparisons:<br />[http://www.mantisdb.org/MANTiS/Welcome.html MANTiS, Université Libre de Bruxelles, Belgium]
* <span class="bold">''D. grimshawi'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA GRIMSHAWI' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_grimshawi Ensembl FTP Trace Repository, EBI, UK]
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* MEROPS, an information resource for peptidases:<br />[http://merops.sanger.ac.uk/ MEROPS, The Sanger Institute, Cambridge, UK]
* <span class="bold">''D. melanogaster'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA MELANOGASTER' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_melanogaster Ensembl FTP Trace Repository, EBI, UK]
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* miRBase, microRNA data:<br />[http://microrna.sanger.ac.uk/sequences/index.shtml miRBase, The Sanger Institute, Cambridge, UK]
* <span class="bold">''D. mojavensis'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA MOJAVENSIS' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_mojavensis Ensembl FTP Trace Repository, EBI, UK]
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* MitoDrome, ''Drosophila melanogaster'' nuclear genes encoding for mitochondrial proteins:<br />[http://www2.ba.itb.cnr.it/MitoDrome/ MitoDrome, Bari, Italy]
* <span class="bold">''D. persimilis'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA PERSIMILIS' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_persimilis Ensembl FTP Trace Repository, EBI, UK]
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* Mitotic Spindle Assembly Database:<br />[http://rnai.ucsf.edu/mitospindlescreen/index.html Genes Required for Mitotic Spindle Assembly in S2 cells, University of California, San Francisco, USA]
* <span class="bold">''D. pseudoobscura'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA PSEUDOOBSCURA' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_pseudoobscura Ensembl FTP Trace Repository, EBI, UK]
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* NHGRI Drosophila Genome Sequencing Proposals, Status of Sequencing:<br />[http://genome.gov/page.cfm?pageID=10002154 National Human Genome Research Institute, Bethesda, MD, USA]
* <span class="bold">''D. sechellia'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA SECHELLIA' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_sechellia Ensembl FTP Trace Repository, EBI, UK]
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* Panther protein classification system:<br />[http://panther.appliedbiosystems.com/about.jsp Panther Protein Classification System, Applied Biosystems &amp; Celera, USA]
* <span class="bold">''D. simulans'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA SIMULANS' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_simulans Ensembl FTP Trace Repository, EBI, UK]
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* PDB, Protein Data Bank:<br />[http://www.rcsb.org/pdb/home/home.do PDB, The Research Collaboratory for Structural Bioinformatics (RCSB) consortium]
* <span class="bold">''D. virilis'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA VIRILIS' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_virilis Ensembl FTP Trace Repository, EBI, UK]
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* PhospoPep - phosphorylation site data from ''D. melanogaster'' cell lines:<br />[http://www.phosphopep.org/ The Aebersold group at the ETH in collaboration with the FGCZ in Switzerland, and the ISB, USA.]
* <span class="bold">''D. willistoni'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA WILLISTONI' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_willistoni Ensembl FTP Trace Repository, EBI, UK]
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* Proteome analysis of Drosophila:<br />[http://www.ebi.ac.uk/integr8/ProteomeAnalysisAction.do?orgProteomeID=17 Proteome analysis, EBI, UK]
* <span class="bold">''D. yakuba'' genomic sequence trace archives:</span><br />[http://www.ncbi.nlm.nih.gov/Traces/trace.fcgi?cmd=retrieve&s=search&m=obtain&retrieve.x=40&retrieve.y=13&val=species_code='DROSOPHILA YAKUBA' NCBI Trace Archives, USA]<br />[ftp://ftp.ensembl.org/pub/traces/drosophila_yakuba Ensembl FTP Trace Repository, EBI, UK]
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* PubMed, Biomedical literature citations and abstracts:<br />[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed PubMed, NCBI, Bethesda, MD USA]
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* REDfly, Regulatory Element Database for Drosophila:<br />[http://redfly.ccr.buffalo.edu/ REDfly, University at Buffalo, New York, USA]
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* Rfam, RNA families database of alignments and CMs:<br />[http://www.sanger.ac.uk/Software/Rfam/ Rfam, the Sanger Institute, Cambridge, UK and Janelia Farm, Ashburn, VA, USA]
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* Sebida, Sex Bias Database:<br />[http://141.61.102.16:8080/sebida/index.php Sebida, MPI Martinsried, Germany]
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* TaxoDros, the database on Taxonomy of Drosophilidae:<br />[http://taxodros.unizh.ch/ TaxoDros, University of Zurich, Switzerland]
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* The Drosophila Transcription Factor Database:<br />[http://www.flytf.org/ FlyTF.org, MRC Cambridge, UK]
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* The McGill ''Drosophila melanogaster'' Genome Project:<br />[http://www.mcgill.ca/Biology/labs/MDGP/home.html McGill Drosophila Genome Project, Canada]
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* TRANSFAC, A database of transcription factors and their binding sites:<br />[http://www.gene-regulation.com/pub/databases.html#transfac TRANSFAC, Braunschweig, Germany]
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* TransTerm, a Translational Signal Database:<br />[http://uther.otago.ac.nz/Transterm.html TransTerm, Dunedin, New Zealand]
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* UniProtKB, a comprehensive catalog of information on proteins:<br />[http://www.pir.uniprot.org/ UniProtKB, The UniProt Consortium]
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* Whole genome comparative analysis of ''D. melanogaster'' and ''D. pseudoobscura''<nowiki>:</nowiki><br />[http://pipeline.lbl.gov/pseudo/ Whole genome analysis, LBNL, USA]
  
 
=Genetic and Protein Interaction Databases=
 
=Genetic and Protein Interaction Databases=

Revision as of 14:51, 17 April 2014

Comparative Analyses and Genome Databases

Genetic and Protein Interaction Databases

Sequence Analysis

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