Difference between revisions of "FlyBase:Drosophila Network Resources"

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=Comparative Analysises and Genome Databases=
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* Assembly/Alignment/Annotation of 12 related Drosophila species:<br />[http://rana.lbl.gov/drosophila/ Assembly/Alignment/Annotation, LBNL, USA]
* <span class="bold">Assembly/Alignment/Annotation of 12 related Drosophila species:</span><br />[http://rana.lbl.gov/drosophila/ Assembly/Alignment/Annotation, LBNL, USA]
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* BDGP Single Nucleotide Polymorphism (SNP) Project:<br />[http://www.fruitfly.org/SNP/ Berkeley Drosophila Genome Project, University of California, Berkeley, USA]
* <span class="bold">BDGP Single Nucleotide Polymorphism (SNP) Project:</span><br />[http://www.fruitfly.org/SNP/ Berkeley Drosophila Genome Project, University of California, Berkeley, USA]
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* Berkeley Drosophila Genome Project (BDGP):<br />[http://www.fruitfly.org/ BDGP, University of California, Berkeley, USA]
* <span class="bold">Berkeley Drosophila Genome Project (BDGP):</span><br />[http://www.fruitfly.org/ BDGP, University of California, Berkeley, USA]
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* BDTNP, ChIP/chip in vivo DNA binding data:<br />[http://bdtnp.lbl.gov/Fly-Net/chipchip.jsp?w=summary Berkeley Drosophila Transcription Network Project, University of California, Berkeley, USA]
* <span class="bold">BDTNP, ChIP/chip in vivo DNA binding data:</span><br />[http://bdtnp.lbl.gov/Fly-Net/chipchip.jsp?w=summary Berkeley Drosophila Transcription Network Project, University of California, Berkeley, USA]
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* CluSTr protein sequence similarity analysis of Drosophila:<br />[http://www.ebi.ac.uk/integr8/ClustrAnalysisPage.do?orgProteomeID=17 CluSTr proteome analysis, EBI, UK]
* <span class="bold">CluSTr protein sequence similarity analysis of Drosophila:</span><br />[http://www.ebi.ac.uk/integr8/ClustrAnalysisPage.do?orgProteomeID=17 CluSTr proteome analysis, EBI, UK]
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* ''D. pseudoobscura'' genome project:<br />[http://www.hgsc.bcm.tmc.edu/projects/drosophila/ Human Genome Sequencing Center, Baylor College of Medicine, USA]
* <span class="bold">''D. pseudoobscura'' genome project:</span><br />[http://www.hgsc.bcm.tmc.edu/projects/drosophila/ Human Genome Sequencing Center, Baylor College of Medicine, USA]
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* ''D. simulans'' genome project:<br />[http://genome.wustl.edu/genome.cgi?GENOME=Drosophila simulans White 501 Genome Sequencing Center, Washington University, USA]
* <span class="bold">''D. simulans'' genome project:</span><br />[http://genome.wustl.edu/genome.cgi?GENOME=Drosophila simulans White 501 Genome Sequencing Center, Washington University, USA]
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* ''D. yakuba'' genome project:<br />[http://genome.wustl.edu/genome.cgi?GENOME=Drosophila yakuba Genome Sequencing Center, Washington University, USA]
* <span class="bold">''D. yakuba'' genome project:</span><br />[http://genome.wustl.edu/genome.cgi?GENOME=Drosophila yakuba Genome Sequencing Center, Washington University, USA]
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* ''D. melanogaster'' UCSC Genome Browser Gateway:<br />[http://genome.ucsc.edu/cgi-bin/hgGateway?org=D. melanogaster&db=0 University of California, Santa Cruz, USA]
* <span class="bold">''D. melanogaster'' UCSC Genome Browser Gateway:</span><br />[http://genome.ucsc.edu/cgi-bin/hgGateway?org=D. melanogaster&db=0 University of California, Santa Cruz, USA]
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* DDBJ, the DNA Data Bank of Japan:<br />[http://www.ddbj.nig.ac.jp/ DDBJ, National Institute of Genetics, Mishima, Japan]
* <span class="bold">DDBJ, the DNA Data Bank of Japan:</span><br />[http://www.ddbj.nig.ac.jp/ DDBJ, National Institute of Genetics, Mishima, Japan]
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* DNase I Footprint Database<nowiki>: </nowiki><br />[http://www.flyreg.org/ University of Manchester Bioinformatics Resources, University of Manchester, UK]
* <span class="bold">DNase I Footprint Database</span><nowiki>: </nowiki><br />[http://www.flyreg.org/ University of Manchester Bioinformatics Resources, University of Manchester, UK]
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* Drosophila Heterochromatin Genome Project (DHGP):<br />[http://dhgp.org/ DHGP, Lawrence Berkeley National Laboratory, USA]
* <span class="bold">Drosophila Heterochromatin Genome Project (DHGP):</span><br />[http://dhgp.org/ DHGP, Lawrence Berkeley National Laboratory, USA]
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* ''Drosophila melanogaster'' Exon Database (DEDB):<br />[http://proline.bic.nus.edu.sg/dedb/ DEDB, National University of Singapore]
* <span class="bold">''Drosophila melanogaster'' Exon Database (DEDB):</span><br />[http://proline.bic.nus.edu.sg/dedb/ DEDB, National University of Singapore]
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* Drosophila Polymorphism Database:<br />[http://bioinformatica.uab.es/dpdb/ Drosophila Polymorphism Database, Univ. Autònoma de Barcelona, Spain]
* <span class="bold">Drosophila Polymorphism Database:</span><br />[http://bioinformatica.uab.es/dpdb/ Drosophila Polymorphism Database, Univ. Autònoma de Barcelona, Spain]
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* Drosophila Population Genomic Project (DPGP):<br />[http://www.dpgp.org/ DPGP, University of California, Davis, USA]
* <span class="bold">Drosophila Population Genomic Project (DPGP):</span><br />[http://www.dpgp.org/ DPGP, University of California, Davis, USA]
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* Drosophila simulans and yakuba sequencing projects:<br />[http://www.dpgp.org/sim_yak/index.html DPGP, University of California, Davis, USA]
* <span class="bold">Drosophila simulans and yakuba sequencing projects:</span><br />[http://www.dpgp.org/sim_yak/index.html DPGP, University of California, Davis, USA]
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* Drosophilidae Taxonomic Database:<br />[http://bioinfo.lowtem.hokudai.ac.jp/db/modules/stdb/ Drosophilidae Taxonomic Database, Japan]
* <span class="bold">Drosophilidae Taxonomic Database:</span><br />[http://bioinfo.lowtem.hokudai.ac.jp/db/modules/stdb/ Drosophilidae Taxonomic Database, Japan]
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* Drosophilidae Taxonomy - Collection of Papers:<br />[http://www.dgrc.kit.ac.jp/~jdd/class/index.html Japan Drosophila Database (JDD) on Taxonomy, Japan]
* <span class="bold">Drosophilidae Taxonomy - Collection of Papers:</span><br />[http://www.dgrc.kit.ac.jp/~jdd/class/index.html Japan Drosophila Database (JDD) on Taxonomy, Japan]
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* DRSC, Drosophila RNAi Screening Center:<br />[http://www.flyrnai.org/index.html DRSC, Harvard Medical School, Boston, MA, USA]
* <span class="bold">DRSC, Drosophila RNAi Screening Center:</span><br />[http://www.flyrnai.org/index.html DRSC, Harvard Medical School, Boston, MA, USA]
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* EMBL Nucleotide Sequence Database:<br />[http://www.ebi.ac.uk/embl/ EMBL Nucleotide Sequence Database, EBI, Cambridge, UK]
* <span class="bold">EMBL Nucleotide Sequence Database:</span><br />[http://www.ebi.ac.uk/embl/ EMBL Nucleotide Sequence Database, EBI, Cambridge, UK]
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* EPD, the Eukaryotic Promoter Database:<br />[http://www.epd.isb-sib.ch/ EPD, Epalinges s/Lausanne, Switzerland]
* <span class="bold">EPD, the Eukaryotic Promoter Database:</span><br />[http://www.epd.isb-sib.ch/ EPD, Epalinges s/Lausanne, Switzerland]
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* euGenes, Genomic Information for Eukaryotic Organisms, including Drosophila:<br />[http://iubio.bio.indiana.edu/eugenes/  euGenes, Indiana University, USA]
* <span class="bold">euGenes, Genomic Information for Eukaryotic Organisms, including Drosophila:</span><br />[http://iubio.bio.indiana.edu/eugenes/  euGenes, Indiana University, USA]
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* EvoPrinter, Identification of Evolutionarily Resilient DNA Sequences<br />[http://evoprinter.ninds.nih.gov/ NINDS, NIH, Bethesda MD, USA]
* <span class="bold">EvoPrinter, Identification of Evolutionarily Resilient DNA Sequences</span><br />[http://evoprinter.ninds.nih.gov/ NINDS, NIH, Bethesda MD, USA]
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* FLIGHT, Fly database for the Integration of Genomic and High-Throughput data:<br />[http://flight.licr.org/ FLIGHT Database, Ludwig Institute for Cancer Research, London, UK]
* <span class="bold">FLIGHT, Fly database for the Integration of Genomic and High-Throughput data:</span><br />[http://flight.licr.org/ FLIGHT Database, Ludwig Institute for Cancer Research, London, UK]
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* FlyAtlas, the Drosophila adult gene expression atlas:<br />[http://www.flyatlas.org/ FlyAtlas, University of Glasgow, UK]
* <span class="bold">FlyAtlas, the Drosophila adult gene expression atlas:</span><br />[http://www.flyatlas.org/ FlyAtlas, University of Glasgow, UK]
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* FlyMine, an integrated database for Drosophila &amp; Anopheles genomics:<br />[http://www.flymine.org/ University of Cambridge, United Kingdom]
* <span class="bold">FlyMine, an integrated database for Drosophila &amp; Anopheles genomics:</span><br />[http://www.flymine.org/ University of Cambridge, United Kingdom]
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* FlyPhenomics, phenotypic differences between species of the ''D. melanogaster'' subgroup:<br />[http://www.normalesup.org/~vorgogoz/FlyPhenomics/ FlyPhenomics, Paris, France]
* <span class="bold">FlyPhenomics, phenotypic differences between species of the ''D. melanogaster'' subgroup:</span><br />[http://www.normalesup.org/~vorgogoz/FlyPhenomics/ FlyPhenomics, Paris, France]
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* FlySNP Project:<br />[http://flysnp.imp.univie.ac.at/ FlySNP, Austrian Academy of Sciences, Austria]
* <span class="bold">FlySNP Project:</span><br />[http://flysnp.imp.univie.ac.at/ FlySNP, Austrian Academy of Sciences, Austria]
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* GenBank,the NIH genetic sequence database:<br />[http://www.ncbi.nlm.nih.gov/Genbank/ GenBank, NCBI, Bethesda, MD USA]
* <span class="bold">GenBank,the NIH genetic sequence database:</span><br />[http://www.ncbi.nlm.nih.gov/Genbank/ GenBank, NCBI, Bethesda, MD USA]
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* GenomeRNAi, Heidelberg, a database of RNA interference (RNAi) screens in cultured Drosophila cells:<br />[http://www.dkfz.de/signaling2/rnai/index.php GenomeRNAi, DKFZ, Heidelberg, Germany]
* <span class="bold">GenomeRNAi, Heidelberg, a database of RNA interference (RNAi) screens in cultured Drosophila cells:</span><br />[http://www.dkfz.de/signaling2/rnai/index.php GenomeRNAi, DKFZ, Heidelberg, Germany]
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* GEO, NCBI's Gene Expression Omnibus:<br />[http://www.ncbi.nlm.nih.gov/geo/ GEO, NCBI, Bethesda, MD USA]
* <span class="bold">GEO, NCBI's Gene Expression Omnibus:</span><br />[http://www.ncbi.nlm.nih.gov/geo/ GEO, NCBI, Bethesda, MD USA]
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* GPCRDB, information system for G protein-coupled receptors (GPCRs):<br />[http://www.gpcr.org/7tm/ GPCRDB, The GPCRDB (G Protein-Coupled Receptor Data Base) partnership]
* <span class="bold">GPCRDB, information system for G protein-coupled receptors (GPCRs):</span><br />[http://www.gpcr.org/7tm/ GPCRDB, The GPCRDB (G Protein-Coupled Receptor Data Base) partnership]
 
* <span class="bold">Homophila, Human Disease to Drosophila Gene Database:</span><br />[http://superfly.ucsd.edu/homophila/  Homophila, San Diego, USA]
 
* <span class="bold">InParanoid, Eukaryotic Ortholog Groups:</span><br />[http://inparanoid.sbc.su.se/cgi-bin/index.cgi InParanoid, Karolinska Institute, Sweden]
 
* <span class="bold">InterPro protein domain analysis of Drosophila:</span><br />[http://www.ebi.ac.uk/integr8/InterproAnalysisPage.do?orgProteomeID=17 InterPro proteome analysis, EBI, UK]
 
* <span class="bold">MANTiS a phylogenetic framework for multi-species genome comparisons:</span><br />[http://www.mantisdb.org/MANTiS/Welcome.html MANTiS, Université Libre de Bruxelles, Belgium]
 
* <span class="bold">MEROPS, an information resource for peptidases:</span><br />[http://merops.sanger.ac.uk/ MEROPS, The Sanger Institute, Cambridge, UK]
 
* <span class="bold">miRBase, microRNA data:</span><br />[http://microrna.sanger.ac.uk/sequences/index.shtml miRBase, The Sanger Institute, Cambridge, UK]
 
* <span class="bold">MitoDrome, ''Drosophila melanogaster'' nuclear genes encoding for mitochondrial proteins:</span><br />[http://www2.ba.itb.cnr.it/MitoDrome/ MitoDrome, Bari, Italy]
 
* <span class="bold">Mitotic Spindle Assembly Database:</span><br />[http://rnai.ucsf.edu/mitospindlescreen/index.html Genes Required for Mitotic Spindle Assembly in S2 cells, University of California, San Francisco, USA]
 
* <span class="bold">NHGRI Drosophila Genome Sequencing Proposals, Status of Sequencing:</span><br />[http://genome.gov/page.cfm?pageID=10002154 National Human Genome Research Institute, Bethesda, MD, USA]
 
* <span class="bold">Panther protein classification system:</span><br />[http://panther.appliedbiosystems.com/about.jsp Panther Protein Classification System, Applied Biosystems &amp; Celera, USA]
 
* <span class="bold">PDB, Protein Data Bank:</span><br />[http://www.rcsb.org/pdb/home/home.do PDB, The Research Collaboratory for Structural Bioinformatics (RCSB) consortium]
 
* <span class="bold">PhospoPep - phosphorylation site data from ''D. melanogaster'' cell lines:</span><br />[http://www.phosphopep.org/ The Aebersold group at the ETH in collaboration with the FGCZ in Switzerland, and the ISB, USA.]
 
* <span class="bold">Proteome analysis of Drosophila:</span><br />[http://www.ebi.ac.uk/integr8/ProteomeAnalysisAction.do?orgProteomeID=17 Proteome analysis, EBI, UK]
 
* <span class="bold">PubMed, Biomedical literature citations and abstracts:</span><br />[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed PubMed, NCBI, Bethesda, MD USA]
 
* <span class="bold">REDfly, Regulatory Element Database for Drosophila:</span><br />[http://redfly.ccr.buffalo.edu/ REDfly, University at Buffalo, New York, USA]
 
* <span class="bold">Rfam, RNA families database of alignments and CMs:</span><br />[http://www.sanger.ac.uk/Software/Rfam/ Rfam, the Sanger Institute, Cambridge, UK and Janelia Farm, Ashburn, VA, USA]
 
* <span class="bold">Sebida, Sex Bias Database:</span><br />[http://141.61.102.16:8080/sebida/index.php Sebida, MPI Martinsried, Germany]
 
* <span class="bold">TaxoDros, the database on Taxonomy of Drosophilidae:</span><br />[http://taxodros.unizh.ch/ TaxoDros, University of Zurich, Switzerland]
 
* <span class="bold">The Drosophila Transcription Factor Database:</span><br />[http://www.flytf.org/ FlyTF.org, MRC Cambridge, UK]
 
* <span class="bold">The McGill ''Drosophila melanogaster'' Genome Project:</span><br />[http://www.mcgill.ca/Biology/labs/MDGP/home.html McGill Drosophila Genome Project, Canada]
 
* <span class="bold">TRANSFAC, A database of transcription factors and their binding sites:</span><br />[http://www.gene-regulation.com/pub/databases.html#transfac TRANSFAC, Braunschweig, Germany]
 
* <span class="bold">TransTerm, a Translational Signal Database:</span><br />[http://uther.otago.ac.nz/Transterm.html TransTerm, Dunedin, New Zealand]
 
* <span class="bold">UniProtKB, a comprehensive catalog of information on proteins:</span><br />[http://www.pir.uniprot.org/ UniProtKB, The UniProt Consortium]
 
* <span class="bold">Whole genome comparative analysis of ''D. melanogaster'' and ''D. pseudoobscura''<nowiki>:</nowiki></span><br />[http://pipeline.lbl.gov/pseudo/ Whole genome analysis, LBNL, USA]
 
  
 
=Sequence Traces of Drosophila Genomes=
 
=Sequence Traces of Drosophila Genomes=

Revision as of 14:48, 17 April 2014

Sequence Traces of Drosophila Genomes

Genetic and Protein Interaction Databases

Sequence Analysis

Atlases, Images, and Videos

Other