FlyBase:Differences between JBrowse and GBrowse on FlyBase
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Table of Differences between features available in FlyBase JBrowse and GBrowse
Warning |
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Information about GBrowse is only relevant to users of an archived instance of FlyBase earlier than FB2022_05.
For users working with the current release at flybase.org, please see our page about FlyBase:JBrowse, the genome viewer that replaced GBrowse. |
Feature | Present in GBrowse (?) | Present in JBrowse (?) |
---|---|---|
Track Selection | ||
Tracks selection panel on same page as genome browser | Yes | |
Uploadable files | GFF, bed | GFF, bed,bigWig |
Drosophila Species | ||
Dsim, Dpse, Dana, Dvir available | Yes | Yes |
Other Non-Dmel species available | Yes | |
General Features | ||
Option to flip strand orientation | Yes | |
Option to save view and share as a URL | Yes | |
Choose normal, compressed, or compact view for tracks | Yes | |
Option to pin a track to the top of the view | Yes | |
Option to create combined tracks | Yes | |
Ability to search for sequence strings | Yes | |
Retrieve Region Data in alternative format | ||
Retrieve decorated FASTA | Yes | |
HTML table view available | Yes | |
Save region data as BED file or Sequin Table (both offer GFF) | Yes | |
Data Available | ||
Transcription Start Sites | Yes | subset |
Genome Variation | Yes | |
sgRNA Reagents | subset | Yes |
Chromatin domains | Yes | |
Gene predictions | Yes | |
Protein similarity | Yes | |
Microarray features | Yes | |
Aberrations | Yes | subset |
BAC data | Yes | |
Complete list of track differences |