FlyBase:Differences between JBrowse and GBrowse on FlyBase
Revision as of 18:47, 15 June 2018 by Bmatthew (talk | contribs) (→Table of Differences between features available in FlyBase JBrowse and GBrowse)
Table of Differences between features available in FlyBase JBrowse and GBrowse
| Feature | Present in GBrowse (?) | Present in JBrowse (?) |
|---|---|---|
| Track Selection | ||
| Tracks selection panel on same page as genome browser | Yes | |
| Uploadable files | GFF, bed | GFF, bed,bigWig |
| Drosophila Species | ||
| Non-Dmel species available | Yes | |
| General Features | ||
| Option to flip strand orientation | Yes | |
| Option to save view and share as a URL | Yes | |
| Choose normal, compressed, or compact view for tracks | Yes | |
| Option to pin a track to the top of the view | Yes | |
| Option to create combined tracks | Yes | |
| Ability to search for sequence strings | Yes | |
| Retrieve Region Data in alternative format | ||
| Retrieve decorated FASTA | Yes | |
| HTML table view available | Yes | |
| Save region data as BED file or Sequin Table (both offer GFF) | Yes | |
| Data Available | ||
| All data tracks available | Yes | |
| Transcription Start Sites | Yes | subset |
| Chromatin domains | Yes | |
| Gene predictions | Yes | |
| Protein similarity | Yes | |
| Microarray features | Yes | |
| Aberrations | Yes | subset |
| BAC data | Yes | |
| Complete list of track differences |