FlyBase:Complete list of GBrowse/JBrowse Track Differences
Revision as of 16:30, 16 May 2018 by Bmatthew (talk | contribs) (→Complete list of Data Tracks present in GBrowse but not in JBrowse)
Complete list of Data Tracks present in GBrowse but not in JBrowse
| Basic Tracks |
|---|
| CDS track |
| Restriction Sites |
| Transcription Start Sites |
| RAMPAGE (stage specific) |
| MachiBase |
| Mapped Mutations |
| Transgenic insertions in stocks (Bloomington, Kyoto, Harvard Medical School) |
| Gene Predictions |
| Gene Predictions (NCBI Gnomon, CONTRAST, PhyloCSF) |
| Protein Similarity |
| Similarity to Dmel proteins |
| Similarity to Other proteins |
| Noncoding Features |
| TFBS - mesoderm |
| Chromatin Domains |
| Histone Modifications |
| Microarray Features |
| Affymetrix |
| DGRC amplicons |
| RNA-Seq |
| RNA-Seq Cell lines |
| RNA-Seq Treatments/Conditions |
| RNA-Seq by Tissue (digestive system, fat body/salivary glands, imaginal disc/carcass, CNS/adult head, gonads/male accessory glands, L3 CNS neuron and neuroblast) |
| Small RNA-Seq (tissues, developmental stages, cell lines) |
| Track identities available in color-coded table |
| Configure RNA-Seq view (log2 or linear scaling, tilted or vertical tracks, track spacing, track selection) |
| Aberrations |
| Stock Center Aberrations |
| Bloomington Deficiency Kit |
| Other Reagents |
| BAC clones (Tiling, Pacman) |
| VDRC Vienna Tiles GAL4 lines |