Difference between revisions of "FlyBase:Complete list of GBrowse/JBrowse Track Differences"

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(Created page with "= Complete list of Data Tracks in GBrowse, not JBrowse = {|cellpadding=3 |- !style="background: #efefef;"| Basic Tracks |- |style="white-space: nowrap;"| CDS track |- |style=...")
 
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|style="white-space: nowrap;"| MachiBase
 
|style="white-space: nowrap;"| MachiBase
 
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!style="background: #efefef;"| Mapped Mutations
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|style="white-space: nowrap;"| Transgenic insertions in stocks (Bloomington, Kyoto, Harvard Medical School)
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!style="background: #efefef;"| Gene Predictions
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|style="white-space: nowrap;"| Gene Predictions (NCBI Gnomon, CONTRAST, PhyloCSF)
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!style="background: #efefef;"| Protein Similarity
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|style="white-space: nowrap;"| Similarity to Dmel proteins
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|style="white-space: nowrap;"| Similarity to Other proteins
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!style="background: #efefef;"| Noncoding Features
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|style="white-space: nowrap;"| TFBS - mesoderm
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|style="white-space: nowrap;"| Chromatin Domains
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|style="white-space: nowrap;"| Histone Modifications
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!style="background: #efefef;"| Microarray Features
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|style="white-space: nowrap;"| Affymetrix
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|style="white-space: nowrap;"| DGRC amplicons
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!style="background: #efefef;"| RNA-Seq
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|style="white-space: nowrap;"| RNA-Seq Cell lines
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|style="white-space: nowrap;"| RNA-Seq Treatments/Conditions
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|style="white-space: nowrap;"| RNA-Seq  by Tissue (digestive system, fat body/salivary, imaginal disc/darcass, CNS, gonads, L3 CNS)
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|style="white-space: nowrap;"| Small RNA-Seq (tissues, developmental stages, cell lines)
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|style="white-space: nowrap;"| Track identities available in color-coded table
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|style="white-space: nowrap;"| Configure RNA-Seq view (log2 or linear scaling, tilted or vertical tracks, track spacing, track selection)
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!style="background: #efefef;"| Aberrations
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|style="white-space: nowrap;"| Stock Center Aberrations
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|style="white-space: nowrap;"| Bloomington Deficiency Kit
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!style="background: #efefef;"| Other Reagents
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|style="white-space: nowrap;"| BAC clones (Tiling, Pacman)
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|style="white-space: nowrap;"| VDRC Vienna Tiles GAL4 lines
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Revision as of 18:00, 15 May 2018

Complete list of Data Tracks in GBrowse, not JBrowse

Basic Tracks
CDS track
Restriction Sites
Transcription Start Sites
RAMPAGE (stage specific)
MachiBase
Mapped Mutations
Transgenic insertions in stocks (Bloomington, Kyoto, Harvard Medical School)
Gene Predictions
Gene Predictions (NCBI Gnomon, CONTRAST, PhyloCSF)
Protein Similarity
Similarity to Dmel proteins
Similarity to Other proteins
Noncoding Features
TFBS - mesoderm
Chromatin Domains
Histone Modifications
Microarray Features
Affymetrix
DGRC amplicons
RNA-Seq
RNA-Seq Cell lines
RNA-Seq Treatments/Conditions
RNA-Seq by Tissue (digestive system, fat body/salivary, imaginal disc/darcass, CNS, gonads, L3 CNS)
Small RNA-Seq (tissues, developmental stages, cell lines)
Track identities available in color-coded table
Configure RNA-Seq view (log2 or linear scaling, tilted or vertical tracks, track spacing, track selection)
Aberrations
Stock Center Aberrations
Bloomington Deficiency Kit
Other Reagents
BAC clones (Tiling, Pacman)
VDRC Vienna Tiles GAL4 lines


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