Difference between revisions of "FlyBase:Complete list of GBrowse/JBrowse Track Differences"
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(Created page with "= Complete list of Data Tracks in GBrowse, not JBrowse = {|cellpadding=3 |- !style="background: #efefef;"| Basic Tracks |- |style="white-space: nowrap;"| CDS track |- |style=...") |
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− | = | + | = Data Tracks present in GBrowse but not in JBrowse = |
{|cellpadding=3 | {|cellpadding=3 | ||
|- | |- | ||
− | !style="background: #efefef;"| | + | !style="background: #efefef;"| Gene Predictions |
|- | |- | ||
− | |style="white-space: nowrap;"| | + | |style="white-space: nowrap;"| CONTRAST |
|- | |- | ||
− | |style="white-space: nowrap;"| | + | !style="background: #efefef;"| Protein Similarity |
+ | |- | ||
+ | |style="white-space: nowrap;"| Similarity to Dmel proteins | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Similarity to Other proteins | ||
+ | |- | ||
+ | !style="background: #efefef;"| RNA-Seq | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| RNA-Seq Developmental Stages, unstranded (Baylor) | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Configure RNA-Seq view (log2 or linear scaling, tilted or vertical tracks, track spacing, track selection) | ||
+ | |- | ||
+ | !style="background: #efefef;"| Other Reagents | ||
|- | |- | ||
− | + | |style="white-space: nowrap;"| BAC clones (Tiling) | |
|- | |- | ||
− | + | !style="background: #efefef;"| Analysis | |
|- | |- | ||
− | |style="white-space: nowrap;"| | + | |style="white-space: nowrap;"| Restriction Sites |
|- | |- | ||
− | |||
|} | |} | ||
<br/> | <br/> | ||
+ | |||
+ | = Data Tracks present in JBrowse but not in GBrowse = | ||
+ | |||
+ | {|cellpadding=3 | ||
+ | |- | ||
+ | !style="background: #efefef;"| Aligned Evidence | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| proteomic peptides | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Polyadenylation sites | ||
+ | |- | ||
+ | !style="background: #efefef;"| Noncoding Features | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Putative Brain Enhancers (Janelia GAL4 lines) | ||
+ | |- | ||
+ | !style="background: #efefef;"| Genome Variation Data | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| DGRP Variants | ||
+ | |- | ||
+ | !style="background: #efefef;"| sgRNA Reagents | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Predicted sgRNA | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Heidelberg CFD KO sgRNAs (conditional knockout) | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| TRiP-OE-flySAM.dCas9 sgRNAs (overexpression) | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Weizmann KO sgRNAs (knockout) | ||
+ | |- | ||
+ | !style="background: #efefef;"| Expression Levels: RNA-Seq | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| SRA aggregated RNA-Seq (Oliver lab) | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| FlyAtlas2 (various tissues) | ||
+ | |- | ||
+ | !style="background: #efefef;"| Expression Levels: Small RNA-Seq | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| FlyAtlas2 (various tissues) | ||
+ | |- |
Revision as of 19:16, 24 June 2020
Data Tracks present in GBrowse but not in JBrowse
Gene Predictions |
---|
CONTRAST |
Protein Similarity |
Similarity to Dmel proteins |
Similarity to Other proteins |
RNA-Seq |
RNA-Seq Developmental Stages, unstranded (Baylor) |
Configure RNA-Seq view (log2 or linear scaling, tilted or vertical tracks, track spacing, track selection) |
Other Reagents |
BAC clones (Tiling) |
Analysis |
Restriction Sites |
Data Tracks present in JBrowse but not in GBrowse
Aligned Evidence |
---|
proteomic peptides |
Polyadenylation sites |
Noncoding Features |
Putative Brain Enhancers (Janelia GAL4 lines) |
Genome Variation Data |
DGRP Variants |
sgRNA Reagents |
Predicted sgRNA |
Heidelberg CFD KO sgRNAs (conditional knockout) |
TRiP-OE-flySAM.dCas9 sgRNAs (overexpression) |
Weizmann KO sgRNAs (knockout) |
Expression Levels: RNA-Seq |
SRA aggregated RNA-Seq (Oliver lab) |
FlyAtlas2 (various tissues) |
Expression Levels: Small RNA-Seq |
FlyAtlas2 (various tissues) |