Difference between revisions of "FlyBase:Complete list of GBrowse/JBrowse Track Differences"
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(Created page with "= Complete list of Data Tracks in GBrowse, not JBrowse = {|cellpadding=3 |- !style="background: #efefef;"| Basic Tracks |- |style="white-space: nowrap;"| CDS track |- |style=...") |
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|style="white-space: nowrap;"| MachiBase | |style="white-space: nowrap;"| MachiBase | ||
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− | + | !style="background: #efefef;"| Mapped Mutations | |
+ | |- | ||
+ | |style="white-space: nowrap;"| Transgenic insertions in stocks (Bloomington, Kyoto, Harvard Medical School) | ||
+ | |- | ||
+ | !style="background: #efefef;"| Gene Predictions | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Gene Predictions (NCBI Gnomon, CONTRAST, PhyloCSF) | ||
+ | |- | ||
+ | !style="background: #efefef;"| Protein Similarity | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Similarity to Dmel proteins | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Similarity to Other proteins | ||
+ | |- | ||
+ | !style="background: #efefef;"| Noncoding Features | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| TFBS - mesoderm | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Chromatin Domains | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Histone Modifications | ||
+ | |- | ||
+ | !style="background: #efefef;"| Microarray Features | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Affymetrix | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| DGRC amplicons | ||
+ | |- | ||
+ | !style="background: #efefef;"| RNA-Seq | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| RNA-Seq Cell lines | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| RNA-Seq Treatments/Conditions | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| RNA-Seq by Tissue (digestive system, fat body/salivary, imaginal disc/darcass, CNS, gonads, L3 CNS) | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Small RNA-Seq (tissues, developmental stages, cell lines) | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Track identities available in color-coded table | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Configure RNA-Seq view (log2 or linear scaling, tilted or vertical tracks, track spacing, track selection) | ||
+ | |- | ||
+ | !style="background: #efefef;"| Aberrations | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Stock Center Aberrations | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| Bloomington Deficiency Kit | ||
+ | |- | ||
+ | !style="background: #efefef;"| Other Reagents | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| BAC clones (Tiling, Pacman) | ||
+ | |- | ||
+ | |style="white-space: nowrap;"| VDRC Vienna Tiles GAL4 lines | ||
+ | |- | ||
|} | |} | ||
<br/> | <br/> |
Revision as of 18:00, 15 May 2018
Complete list of Data Tracks in GBrowse, not JBrowse
Basic Tracks |
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CDS track |
Restriction Sites |
Transcription Start Sites |
RAMPAGE (stage specific) |
MachiBase |
Mapped Mutations |
Transgenic insertions in stocks (Bloomington, Kyoto, Harvard Medical School) |
Gene Predictions |
Gene Predictions (NCBI Gnomon, CONTRAST, PhyloCSF) |
Protein Similarity |
Similarity to Dmel proteins |
Similarity to Other proteins |
Noncoding Features |
TFBS - mesoderm |
Chromatin Domains |
Histone Modifications |
Microarray Features |
Affymetrix |
DGRC amplicons |
RNA-Seq |
RNA-Seq Cell lines |
RNA-Seq Treatments/Conditions |
RNA-Seq by Tissue (digestive system, fat body/salivary, imaginal disc/darcass, CNS, gonads, L3 CNS) |
Small RNA-Seq (tissues, developmental stages, cell lines) |
Track identities available in color-coded table |
Configure RNA-Seq view (log2 or linear scaling, tilted or vertical tracks, track spacing, track selection) |
Aberrations |
Stock Center Aberrations |
Bloomington Deficiency Kit |
Other Reagents |
BAC clones (Tiling, Pacman) |
VDRC Vienna Tiles GAL4 lines |