FlyBase:Complete list of GBrowse/JBrowse Track Differences
Revision as of 17:48, 14 December 2022 by Victoria Jenkins (talk | contribs) (Added warning about GBrowse info being for archived instances only)
| Warning |
|---|
| Information about GBrowse is only relevant to users of an archived instance of FlyBase earlier than FB2022_05.
For users working with the current release at flybase.org, please see our page about FlyBase:JBrowse, the genome viewer that replaced GBrowse. |
Data Tracks present in GBrowse but not in JBrowse
| Gene Predictions |
|---|
| CONTRAST |
| Protein Similarity |
| Similarity to Dmel proteins |
| Similarity to Other proteins |
| RNA-Seq |
| RNA-Seq Developmental Stages, unstranded (Baylor) |
| Configure RNA-Seq view (log2 or linear scaling, tilted or vertical tracks, track spacing, track selection) |
| Other Reagents |
| BAC clones (Tiling) |
| Analysis |
| Restriction Sites |
Data Tracks present in JBrowse but not in GBrowse
| Aligned Evidence |
|---|
| proteomic peptides |
| Polyadenylation sites |
| Noncoding Features |
| Putative Brain Enhancers (Janelia GAL4 lines) |
| Genome Variation Data |
| DGRP Variants |
| sgRNA Reagents |
| Predicted sgRNA |
| Heidelberg CFD KO sgRNAs (conditional knockout) |
| TRiP-OE-flySAM.dCas9 sgRNAs (overexpression) |
| Weizmann KO sgRNAs (knockout) |
| Expression Levels: RNA-Seq |
| SRA aggregated RNA-Seq (Oliver lab) |
| FlyAtlas2 (various tissues) |
| Expression Levels: Small RNA-Seq |
| FlyAtlas2 (various tissues) |