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**This page is a work-in-progress concept of reformatting our resource and reagent list.**

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CRISPR RNAi Stock Centers Antibodies Other Example

Full Table of Contents

CRISPR

Introduction

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gRNA Design Resources

Resource Description Author/Source
DRSC Find CRISPR Tool A tool for discovering sgRNA targets located throughout the Drosophila genome (release 5) using gene IDs, symbols, or chromosome locations. Allows for filtering of off-target sites and control of mis-match stringency. Also incorporates NAG/NGG PAM sequence detection. DRSC
Harvard Medical School
Boston, USA
CRISPR Optimal Target Finder Identifies sgRNA targets within a provided sequence and additionally searches genome-wide (release 6) for potential off-target sites. Also incorporates NAG/NGG PAM sequence detection. O'Connor-Giles, Wildonger, and Harrison Labs
University of Wisconsin-Madison
WI, USA
E-CRISPR sgRNA genome-wide (release 5) target finder, searchable via gene symbol or sequence. Options for numerous species (fly, human, mouse, others). Offers "relaxed, medium and strict" search options. Also incorporates NAG/NGG PAM sequence detection. DKFZ/Boutros Lab
Heildelberg, Germany
CHOPCHOP To be filled. Schier & Church Labs
Harvard University
Cambridge, USA
Genome Engineering To be filled. Zhang Lab
MIT
Boston, MA, USA
CRISPRscan To be filled. Giraldez Lab
Yale University
New Haven, USA
CRISPOR To be filled. Tefor
France
CRISPR-ERA To be filled. Lei Stanley Qi Lab and Xiaowo Wang Lab
Stanford University
Standford, USA

CRISPR Stocks

Resource Description Author/Source
CRISPR system stocks for site-specific mutagenesis Stocks used to express Cas9 nuclease and/or tracrRNA maternally so that chimeric RNAs (also referred to as guide RNAs) or CRISPR RNAs (crRNAs) can be injected into fly embryos to generate new mutations without the need for helper plasmids, or so that they can be used in combination with chimeric or CRISPR RNAs expressed from transgenic constructs. Bloomington Stock Center
Indiana University
Indiana, USA
CRISPR Fly Design To be filled. MRC - Laboratory of Molecular Biology
The TRiP Toolbox Stocks TRiP Toolbox stocks available at the BDSC. This Toolbox is the set of fly lines used to generate the RNAi transgenic lines, as well as GAL4 lines used by the TRiP that contain UAS-dicer2 to enhance the knock-down. To be filled.

CRISPR Vectors

Resource Author/Source Additional Information
CRISPR system stocks for site-specific mutagenesis Bloomington Stock Center Lorem ipsum dolor sit amet, consectetur adipiscing elit. Nullam et tincidunt ante. Donec tincidunt gravida velit at iaculis. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aenean rutrum quam eget luctus condimentum. Cras in venenatis lectus, at laoreet augue.
CRISPR Fly Design MRC - Laboratory of Molecular Biology Lorem ipsum dolor sit amet, consectetur adipiscing elit. Integer id purus metus. Cras et lacus vel diam posuere facilisis. Vestibulum lorem metus, dapibus nec porta non, fringilla sit amet eros.
Example Example Example
Example Example Example

CRISPR Methods Publications


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RNAi

Introduction

text to be added

RNAi Design/Analysis Tools

Resource Description Author/Source
E-RNAi E-RNAi is a tool for the design and evaluation of RNAi reagents. It can be used to design and evaluate long dsRNAs (including esiRNAs) as well as siRNAs. Boutros lab, DKFZ, Heidelberg, Germany
NEXT-RNAi Software for the design and evaluation of genome-wide RNAi libraries which performs all steps from the prediction of specific and efficient RNAi target sites to the visualization of designed reagents in their genomic context. Boutros lab, DFKZ, Heidelberg, Germany
SnapDragon| Cell-based RNAi reagent design DRSC, Harvard Medical School, Boston, MA, USA
UP-TORR, Updated Targets of RNAi Reagents A lookup tool for searching TRiP, VDRC and NIG in vivo RNAi collections. DRSC, Harvard Medical School, Boston, MA, USA

RNAi Stocks for in vivo studies (fly stocks)

Resource Description Author/Source
NIG_FLY NIG-Fly in Mishima, Japan is part of a consortium with Kyoto-Fly and two other stock centers, and distributes RNAi flies on request. NIG-FLY, Mishima, Japan
BDSC RNAi Home Page Links to lists and sublists of RNAi and miRNA sponge insertions at Bloomington. Most, but not all, of the insertions are under the control of UAS and therefore require GAL4 for expression. BDSC, Bloomington Drosophila Stock Center, Bloomington, IN, USA
TRiP Transgenic RNAi Project The TRiP Stock Collection contains over 9,000 lines, 1,575 of which are for orthologs of human-disease-associated genes. The stocks can be obtained from the BDSC. DRSC, Harvard Medical School, Boston, MA, USA
THFC, Tsinghua Fly Center THFC RNAi Stock Collection for triggering RNAi in soma and germline Tsinghua Fly Center, Beijing, China
VDRC The VDRC at IMP/IMBA in Vienna provides two genome-wide transgenic Drosophila RNAi libraries VDRC, Vienna, Austria

Cell-based RNAi Reagents

Resource Description Author/Source
DRSC Relevant description DRSC, Harvard Medical School, Boston, MA, USA
DRSC Libraries Genome-Wide Libraries for Drosophila RNAi Screening and Validation DRSC, Harvard Medical School, Boston, MA, USA

RNAi Screening Centers

Resource Description Author/Source
DRSC, Drosophila RNAi Screening Center The Drosophila RNAi Screening Center at Harvard Medical School provides high throughput RNAi screens DRSC, Harvard Medical School, Boston, MA, USA
NYU RNAi Screening and Automation Core The NYU RNAi Core Facility at the Langone Medical Center in New York provides high-throughput RNAi screens. Drosophila screens are offered in collaboration with the DRSC NYU RNAi Core, New York, NY, USA
Sheffield RNAi Screening Facility| The SRSF provides a service for whole-genome RNAi screens in Drosophila cells. SRSF, University of Sheffield, Boston, MA, USA
TRiP, Transgenic RNAi Project The TRiP screening facility provides the space and equipment to carry out a complete survey of the current set of TRiP stocks. DRSC, Harvard Medical School, Boston, MA, USA


RNAi Results, Validation and Phenotypes

Resource Description Author/Source
GenomeRNAi GenomeRNAi is a database containing phenotypes from RNA interference (RNAi) screens in Drosophila GenomeRNAi, DKFZ, Heidelberg, Germany
[http://rnaicut.csail.mit.edu/ RNAiCut Automated detection of significant genes from functional genomic screens Berger Lab, MIT, Boston, MA, USA
RSVP| RNAi Stock Validation and Phenotypes DRSC, Harvard Medical School, Boston, MA, USA
Cell-Based Screen Summary A summary of public DRSC screens DRSC, Harvard Medical School, Boston, MA, USA


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Stock Centers

List of Drosophila Stock Centers

Resource Author/Source Additional Information
CRISPR system stocks for site-specific mutagenesis Bloomington Stock Center Lorem ipsum dolor sit amet, consectetur adipiscing elit. Nullam et tincidunt ante. Donec tincidunt gravida velit at iaculis. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aenean rutrum quam eget luctus condimentum. Cras in venenatis lectus, at laoreet augue.
CRISPR Fly Design MRC - Laboratory of Molecular Biology Lorem ipsum dolor sit amet, consectetur adipiscing elit. Integer id purus metus. Cras et lacus vel diam posuere facilisis. Vestibulum lorem metus, dapibus nec porta non, fringilla sit amet eros.
Example Example Example
Example Example Example


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