FlyBase:Differences between JBrowse and GBrowse on FlyBase
Revision as of 17:37, 14 December 2022 by Victoria Jenkins (talk | contribs) (Added warning about GBrowse info being for archived instances only)
Table of Differences between features available in FlyBase JBrowse and GBrowse
| Warning |
|---|
| Information about GBrowse is only relevant to users of an archived instance of FlyBase earlier than FB2022_05.
For users working with the current release at flybase.org, please see our page about FlyBase:JBrowse, the genome viewer that replaced GBrowse. |
| Feature | Present in GBrowse (?) | Present in JBrowse (?) |
|---|---|---|
| Track Selection | ||
| Tracks selection panel on same page as genome browser | Yes | |
| Uploadable files | GFF, bed | GFF, bed,bigWig |
| Drosophila Species | ||
| Dsim, Dpse, Dana, Dvir available | Yes | Yes |
| Other Non-Dmel species available | Yes | |
| General Features | ||
| Option to flip strand orientation | Yes | |
| Option to save view and share as a URL | Yes | |
| Choose normal, compressed, or compact view for tracks | Yes | |
| Option to pin a track to the top of the view | Yes | |
| Option to create combined tracks | Yes | |
| Ability to search for sequence strings | Yes | |
| Retrieve Region Data in alternative format | ||
| Retrieve decorated FASTA | Yes | |
| HTML table view available | Yes | |
| Save region data as BED file or Sequin Table (both offer GFF) | Yes | |
| Data Available | ||
| Transcription Start Sites | Yes | subset |
| Genome Variation | Yes | |
| sgRNA Reagents | subset | Yes |
| Chromatin domains | Yes | |
| Gene predictions | Yes | |
| Protein similarity | Yes | |
| Microarray features | Yes | |
| Aberrations | Yes | subset |
| BAC data | Yes | |
| Complete list of track differences |