Difference between revisions of "FlyBase:New to Flies"
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'''FlyBase''' is a database of genetic and molecular data for ''D. melanogaster'' and other Drosophila species, targeted to an audience of research professionals. The resources listed here may be especially useful to those new to flies. | '''FlyBase''' is a database of genetic and molecular data for ''D. melanogaster'' and other Drosophila species, targeted to an audience of research professionals. The resources listed here may be especially useful to those new to flies. | ||
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==Learning how to use Drosophila== | ==Learning how to use Drosophila== | ||
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'''Online books:''' | '''Online books:''' | ||
− | *[https://www.ias.ac.in/Publications/e-Books/Experiments_with_Drosophila_for_Biology_Courses Experiments with Drosophila for Biology Courses, eds. SC Lakhotia and HA Ranganath | + | *[https://www.ias.ac.in/Publications/e-Books/Experiments_with_Drosophila_for_Biology_Courses Experiments with Drosophila for Biology Courses, eds. SC Lakhotia and HA Ranganath]: features 85 protocols commonly used in Drosophila labs, for use by both undergraduate labs and researchers |
− | *[https://www.intechopen.com/books/5976 Drosophila melanogaster - Model for Recent Advances in Genetics and Therapeutics, ed. FK Perveen | + | *[https://www.intechopen.com/books/5976 Drosophila melanogaster - Model for Recent Advances in Genetics and Therapeutics, ed. FK Perveen]: a disease model centered introduction to Drosophila |
* [https://digitalcommons.mtu.edu/oabooks/1/ The Encyclopedia of North American Drosophilids Volume 1: Drosophilids of the Midwest and Northeast, eds. T Werner, T Steenwinkel, and J Jaenike.] | * [https://digitalcommons.mtu.edu/oabooks/1/ The Encyclopedia of North American Drosophilids Volume 1: Drosophilids of the Midwest and Northeast, eds. T Werner, T Steenwinkel, and J Jaenike.] | ||
The '''[http://www.flyfacility.ls.manchester.ac.uk/forthepublic/outreachresources Manchester Fly Facility]''' has a large compendium of Drosophila-related links for the public, educators, and students. These include information on Drosophila as a model system, general fly-related info, Drosophila movies and images, fly-related equipment, tools, and materials, information for teaching Drosophila at schools and universities, and the history of Drosophila research. | The '''[http://www.flyfacility.ls.manchester.ac.uk/forthepublic/outreachresources Manchester Fly Facility]''' has a large compendium of Drosophila-related links for the public, educators, and students. These include information on Drosophila as a model system, general fly-related info, Drosophila movies and images, fly-related equipment, tools, and materials, information for teaching Drosophila at schools and universities, and the history of Drosophila research. | ||
+ | |||
==Learning Drosophila genetics== | ==Learning Drosophila genetics== | ||
− | + | '''Online guides''': | |
− | + | * [http://www.g3journal.org/content/3/2/353.full How to Design a Genetic Mating Scheme: A Basic Training Package for Drosophila Genetics]: a four-part training package available from John Roote and Andreas Prokop | |
− | + | * [https://bdsc.indiana.edu/stocks/balancers/balancer_intro.html An Introduction to Balancers]: from the [https://bdsc.indiana.edu/index.html BDSC] | |
− | * [http://www.g3journal.org/content/3/2/353.full How to Design a Genetic Mating Scheme: A Basic Training Package for Drosophila Genetics] | + | * Descriptions of the core genetic components of [https://bdsc.indiana.edu/stocks/balancers/balancer_defs.html balancer stocks at BDSC] and [https://kyotofly.kit.jp/stocks/documents/?Balancers balancer stocks at Kyoto Stock Center] |
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− | + | Links to these and many other '''Drosophila resources''' can be found at '''Gerard Manning's Drosophila Virtual Library''': [http://www.ceolas.org/fly/ Virtual Library: Drosophila] | |
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+ | ==External Resources on the FlyBase Wiki== | ||
+ | |||
+ | We have an extensive collection of '''links to external sites''', organized by topic on our [https://wiki.flybase.org/wiki/FlyBase:External_Resources External Resources] page, including things like: | ||
+ | |||
+ | * [https://wiki.flybase.org/wiki/FlyBase:Drosophila_Material_Resources Where to obtain many kinds of '''genetic reagents''']: stocks, cell lines, genomic libraries, antibodies, and more | ||
+ | * [https://www.flyrnai.org/tools/protocols/web/ Drosophila '''protocols''']: categorized at the [https://fgr.hms.harvard.edu/ DRSC Functional Genomics Resources] site | ||
+ | * [https://wiki.flybase.org/wiki/FlyBase:Images '''Image'''-based resources]: including both databases of Drosophila images (anatomy guides, expression from endogenous genes and reporters), and software for image analysis and processing | ||
+ | * Links to technical guides for working with [https://wiki.flybase.org/wiki/FlyBase:CRISPR '''CRISPR'''], [https://wiki.flybase.org/wiki/FlyBase:ScRNA-Seq '''single-cell RNA-seq'''], and [https://wiki.flybase.org/wiki/FlyBase:RNAi '''RNAi'''] | ||
+ | *[https://wiki.flybase.org/wiki/FlyBase:Neuroscience Drosophila '''neuroscience''']: items from the above categories that are specific to neuroscience | ||
+ | *[https://wiki.flybase.org/wiki/FlyBase:Drosophila_Online_Resources Drosophila Online Resources]: includes many more types of resources, such as [https://wiki.flybase.org/wiki/FlyBase:Drosophila_Online_Resources#Orthology_Predictions orthology predictions], [https://wiki.flybase.org/wiki/FlyBase:Drosophila_Online_Resources#Orthology_Predictions transcription regulation databases], [https://wiki.flybase.org/wiki/FlyBase:Drosophila_Online_Resources#Drosophila_Genomes_Data_and_Metadata genomes of other Drosophilids], and more | ||
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[https://flyslackco.slack.com/ FlySlack] | [https://flyslackco.slack.com/ FlySlack] | ||
− | Twitter accounts: see our account at [https://twitter.com/FlyBaseDotOrg FlyBaseDotOrg], and check out other accounts that it follows like [https://twitter.com/alliancegenome alliancegenome]. | + | Twitter accounts: see our account at [https://twitter.com/FlyBaseDotOrg @FlyBaseDotOrg], and check out other accounts that it follows, like the Alliance for Genome Resources [https://twitter.com/alliancegenome @alliancegenome]. |
[http://www.bio.net/hypermail/dros/ Archive of the bionet.drosophila discussion group]: for a historical perspective of 26 years of Drosophila discussion online. | [http://www.bio.net/hypermail/dros/ Archive of the bionet.drosophila discussion group]: for a historical perspective of 26 years of Drosophila discussion online. | ||
[[Category:DONE]] | [[Category:DONE]] |
Revision as of 16:30, 3 November 2022
FlyBase is a database of genetic and molecular data for D. melanogaster and other Drosophila species, targeted to an audience of research professionals. The resources listed here may be especially useful to those new to flies.
Learning how to use Drosophila
A basic introduction to Drosophila can be found at these websites:
- An introduction to Drosophila melanogaster
- Drosophila Workers Unite! A laboratory manual for working with Drosophila
- A quick and simple introduction to Drosophila melanogaster
- FlyMove: Images and movies describing Drosophila development
Online books:
- Experiments with Drosophila for Biology Courses, eds. SC Lakhotia and HA Ranganath: features 85 protocols commonly used in Drosophila labs, for use by both undergraduate labs and researchers
- Drosophila melanogaster - Model for Recent Advances in Genetics and Therapeutics, ed. FK Perveen: a disease model centered introduction to Drosophila
- The Encyclopedia of North American Drosophilids Volume 1: Drosophilids of the Midwest and Northeast, eds. T Werner, T Steenwinkel, and J Jaenike.
The Manchester Fly Facility has a large compendium of Drosophila-related links for the public, educators, and students. These include information on Drosophila as a model system, general fly-related info, Drosophila movies and images, fly-related equipment, tools, and materials, information for teaching Drosophila at schools and universities, and the history of Drosophila research.
Learning Drosophila genetics
Online guides:
- How to Design a Genetic Mating Scheme: A Basic Training Package for Drosophila Genetics: a four-part training package available from John Roote and Andreas Prokop
- An Introduction to Balancers: from the BDSC
- Descriptions of the core genetic components of balancer stocks at BDSC and balancer stocks at Kyoto Stock Center
Computer-simulated genetic experiments can be performed at the following sites:
- Drosophila Simulation ------- Patterns of Heredity
- Virtual Courseware for Inquiry-based Science Education - Drosophila
Links to these and many other Drosophila resources can be found at Gerard Manning's Drosophila Virtual Library: Virtual Library: Drosophila
External Resources on the FlyBase Wiki
We have an extensive collection of links to external sites, organized by topic on our External Resources page, including things like:
- Where to obtain many kinds of genetic reagents: stocks, cell lines, genomic libraries, antibodies, and more
- Drosophila protocols: categorized at the DRSC Functional Genomics Resources site
- Image-based resources: including both databases of Drosophila images (anatomy guides, expression from endogenous genes and reporters), and software for image analysis and processing
- Links to technical guides for working with CRISPR, single-cell RNA-seq, and RNAi
- Drosophila neuroscience: items from the above categories that are specific to neuroscience
- Drosophila Online Resources: includes many more types of resources, such as orthology predictions, transcription regulation databases, genomes of other Drosophilids, and more
How to use FlyBase
All of FlyBase's publications and presentations are on our wiki, and are a great starting place for learning how to use more of FlyBase's features.
FlyBase Frequently Asked Questions
If you have questions, please don't hesitate to contact FlyBase directly.
Social media and online groups
Twitter accounts: see our account at @FlyBaseDotOrg, and check out other accounts that it follows, like the Alliance for Genome Resources @alliancegenome.
Archive of the bionet.drosophila discussion group: for a historical perspective of 26 years of Drosophila discussion online.