Difference between revisions of "FlyBase:Differences between JBrowse and GBrowse on FlyBase"
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|style="background: #efefef; white-space: nowrap;"| '''Data Available''' ||style="background: #efefef;"| ||style="background: #efefef;"| | |style="background: #efefef; white-space: nowrap;"| '''Data Available''' ||style="background: #efefef;"| ||style="background: #efefef;"| | ||
|- | |- | ||
| − | |style="white-space: nowrap;"| | + | |style="white-space: nowrap;"| Transcription Start Sites || Yes ||style="white-space: nowrap;"| subset |
|- | |- | ||
| − | |style="white-space: nowrap;"| | + | |style="white-space: nowrap;"| Genome Variation || ||style="white-space: nowrap;"| Yes |
| + | |- | ||
| + | |style="white-space: nowrap;"| sgRNA Reagents || subset ||style="white-space: nowrap;"| Yes | ||
|- | |- | ||
|style="white-space: nowrap;"| Chromatin domains || Yes ||style="white-space: nowrap;"| | |style="white-space: nowrap;"| Chromatin domains || Yes ||style="white-space: nowrap;"| | ||
Revision as of 20:06, 20 March 2019
Table of Differences between features available in FlyBase JBrowse and GBrowse
| Feature | Present in GBrowse (?) | Present in JBrowse (?) |
|---|---|---|
| Track Selection | ||
| Tracks selection panel on same page as genome browser | Yes | |
| Uploadable files | GFF, bed | GFF, bed,bigWig |
| Drosophila Species | ||
| Non-Dmel species available | Yes | |
| General Features | ||
| Option to flip strand orientation | Yes | |
| Option to save view and share as a URL | Yes | |
| Choose normal, compressed, or compact view for tracks | Yes | |
| Option to pin a track to the top of the view | Yes | |
| Option to create combined tracks | Yes | |
| Ability to search for sequence strings | Yes | |
| Retrieve Region Data in alternative format | ||
| Retrieve decorated FASTA | Yes | |
| HTML table view available | Yes | |
| Save region data as BED file or Sequin Table (both offer GFF) | Yes | |
| Data Available | ||
| Transcription Start Sites | Yes | subset |
| Genome Variation | Yes | |
| sgRNA Reagents | subset | Yes |
| Chromatin domains | Yes | |
| Gene predictions | Yes | |
| Protein similarity | Yes | |
| Microarray features | Yes | |
| Aberrations | Yes | subset |
| BAC data | Yes | |
| Complete list of track differences |