Difference between revisions of "FlyBase:Differences between JBrowse and GBrowse on FlyBase"
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|style="white-space: nowrap;"| Save region data as BED file or Sequin Table (both offer GFF) || ||style="white-space: nowrap;"| Yes | |style="white-space: nowrap;"| Save region data as BED file or Sequin Table (both offer GFF) || ||style="white-space: nowrap;"| Yes | ||
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| + | |style="background: #efefef; white-space: nowrap;"| '''Data Available''' ||style="background: #efefef;"| ||style="background: #efefef;"| | ||
| + | |- | ||
| + | |style="white-space: nowrap;"| '''All data tracks available''' || Yes ||style="white-space: nowrap;"| | ||
| + | |- | ||
| + | |style="white-space: nowrap;"| Transcription Start Sites || Yes ||style="white-space: nowrap;"| subset | ||
| + | |- | ||
| + | |style="white-space: nowrap;"| Chromatin domains || Yes ||style="white-space: nowrap;"| | ||
| + | |- | ||
| + | |style="white-space: nowrap;"| Gene predictions || Yes ||style="white-space: nowrap;"| | ||
| + | |- | ||
| + | |style="white-space: nowrap;"| Protein similarity || Yes ||style="white-space: nowrap;"| | ||
| + | |- | ||
| + | |style="white-space: nowrap;"| Microarray features || Yes ||style="white-space: nowrap;"| | ||
| + | |- | ||
| + | |style="white-space: nowrap;"| RNA-Seq || Yes ||style="white-space: nowrap;"| subset | ||
| + | |- | ||
| + | |style="white-space: nowrap;"| Small RNA-Seq || Yes ||style="white-space: nowrap;"| | ||
| + | |- | ||
| + | |style="white-space: nowrap;"| Aberrations || Yes ||style="white-space: nowrap;"| subset | ||
| + | |- | ||
| + | |style="white-space: nowrap;"| BAC data || Yes ||style="white-space: nowrap;"| | ||
| + | |- | ||
| + | |style="background: #efefef; white-space: nowrap;"| '''Complete list of track differences''' ||style="background: #efefef;"| ||style="background: #efefef;"| | ||
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Revision as of 17:43, 15 May 2018
Table of Differences between features available in FlyBase JBrowse and GBrowse
| Feature | Present in GBrowse (?) | Present in JBrowse (?) |
|---|---|---|
| Track Selection | ||
| Tracks selection panel on same page as genome browser | Yes | |
| Uploadable files | GFF, bed | GFF, bed,bigWig |
| Drosophila Species | ||
| Non-Dmel species available | Yes | |
| General Features | ||
| Option to flip strand orientation | Yes | |
| Option to save view and share as a URL | Yes | |
| Choose normal, compressed, or compact view for tracks | Yes | |
| Option to pin a track to the top of the view | Yes | |
| Option to create combined tracks | Yes | |
| Ability to search for sequence strings | Yes | |
| Retrieve Region Data in alternative format | ||
| Retrieve decorated FASTA | Yes | |
| HTML table view available | Yes | |
| Save region data as BED file or Sequin Table (both offer GFF) | Yes | |
| Data Available | ||
| All data tracks available | Yes | |
| Transcription Start Sites | Yes | subset |
| Chromatin domains | Yes | |
| Gene predictions | Yes | |
| Protein similarity | Yes | |
| Microarray features | Yes | |
| RNA-Seq | Yes | subset |
| Small RNA-Seq | Yes | |
| Aberrations | Yes | subset |
| BAC data | Yes | |
| Complete list of track differences |