Latest revision as of 17:37, 14 December 2022

Table of Differences between features available in FlyBase JBrowse and GBrowse

Warning
Information about GBrowse is only relevant to users of an archived instance of FlyBase earlier than FB2022_05. For users working with the current release at flybase.org, please see our page about FlyBase:JBrowse, the genome viewer that replaced GBrowse.

Feature	Present in GBrowse (?)	Present in JBrowse (?)
Track Selection
Tracks selection panel on same page as genome browser		Yes
Uploadable files	GFF, bed	GFF, bed,bigWig
Drosophila Species
Dsim, Dpse, Dana, Dvir available	Yes	Yes
Other Non-Dmel species available	Yes
General Features
Option to flip strand orientation	Yes
Option to save view and share as a URL		Yes
Choose normal, compressed, or compact view for tracks		Yes
Option to pin a track to the top of the view		Yes
Option to create combined tracks		Yes
Ability to search for sequence strings		Yes
Retrieve Region Data in alternative format
Retrieve decorated FASTA	Yes
HTML table view available	Yes
Save region data as BED file or Sequin Table (both offer GFF)		Yes
Data Available
Transcription Start Sites	Yes	subset
Genome Variation		Yes
sgRNA Reagents	subset	Yes
Chromatin domains	Yes
Gene predictions	Yes
Protein similarity	Yes
Microarray features	Yes
Aberrations	Yes	subset
BAC data	Yes
Complete list of track differences

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 = Table of Differences between features available in FlyBase JBrowse and GBrowse =
+{| class="wikitable" style="text-align: center; color: red; margin: auto;"
+!colspan="1"|Warning
+|-
+|rowspan="1"|Information about GBrowse is only relevant to users of an [http://flybase.org/downloads/archivedata archived] instance of FlyBase earlier than FB2022_05.
+For users working with the current release at [http://flybase.org/ flybase.org], please see our page about [[FlyBase:JBrowse]], the genome viewer that replaced GBrowse.
+|}
 {|cellpadding=3