@@ Line 1: / Line 1: @@
-=Model Organisms=
-{| class="wikitable" border="1"
-|-
-! Database
-! Organism
-! Organism (Genus and species)
-|-
-| [http://hymenopteragenome.org/beebase/ BeeBase]
-| Honey Bee
-| Apis mellifera
-|-
-| [http://beetlebase.org/ BeetleBase]
-| Red Flour Beetle
-| Tribolium castaneum
-|-
-| [http://dictybase.org/ DictyBase]
-| Soil Amoeba
-| Dictyostelium discoideum
-|-
-| [http://ecocyc.org/ EcoCyc]
-| Bacteria
-| Escherichia coli
-|-
-| [http://www.gramene.org/ Gramene]
-| Grasses
-|
-|-
-| [http://www.informatics.jax.org/ MGI]
-| Mouse
-| Mus musculus
-|-
-| [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM/ OMIM]
-| Human
-| Homo sapiens
-|-
-| [http://www.yeastgenome.org// SGD]
-| Budding Yeast
-| Saccharomyces cerevisiae
-|-
-| [http://www.genedb.org/genedb/pombe/index.jsp S. pombe GeneDB]
-| Fission Yeast
-| Schizosaccharomyces pombe
-|-
-| [http://www.arabidopsis.org/ TAIR]
-| Mouse-ear cress
-| Arabidopsis thaliana
-|-
-| [http://www.vectorbase.org/index.php VectorBase]
-| Mosquitos and Deer Tick
-| Anopheles gambiae, Aedes aegypti, Culex pipiens quinquefasciatus, Ixodes scapularis
-|-
-| [http://www.wormbase.org/ WormBase]
-| Round worms
-| Caenorhabditis
-|-
-| [http://zfin.org/cgi-bin/webdriver?MIval=aa-ZDB_home.apg ZFIN]
-| Zebrafish
-| Danio rerio
-|}
-=Related Projects=
-:[http://www.gmod.org/ GMOD]
-:[http://www.geneontology.org/ Gene Ontology (GO)]
-:[http://www.genomeknowledge.org/ Reactome]
-:[http://www.fruitfly.org/ BDGP (Berkeley Drosophila Genome Project)]
-:[http://dgrc.cgb.indiana.edu/ DGRC (Drosophila Genomics Resource Center)]
-:[http://www.ou.edu/journals/dis/byissue.html DIS by issue]
-:[http://www.flyexpress.net/ FlyExpress]
-:[http://www.sdbonline.org/fly/aimain/1aahome.htm Interactive Fly]
-:[http://www.modencode.org/ modENCODE]
-:[http://www.textpresso.org/fly/ Textpresso for Fly]
-=Stock Collections=
-===''D. melanogaster'' Collections===
-:[http://flystocks.bio.indiana.edu/ Bloomington]
-:[http://www.drosdel.org.uk/ DrosDel]
-:[http://drosophila.med.harvard.edu/ Exelixis (Harvard)]
-:[http://flypush.imgen.bcm.tmc.edu/pscreen/ GDP (Baylor)]
-:[http://www.dgrc.kit.ac.jp/ Kyoto]
-:[http://www.shigen.nig.ac.jp/fly/nigfly/ NIG-Fly]
-:[http://stockcenter.vdrc.at/control/main VDRC]
-===Species Collections===
-:[http://kyotofly.kit.jp/cgi-bin/ehime/index.cgi Ehime]
-:[https://stockcenter.ucsd.edu/info/welcome.php UC San Diego]
-===Other public collections===
-:'''Drosophila Gene Search Project'''
-:Information about ordering P{GS} lines can be found at http://gsdb.biol.metro-u.ac.jp/~dclust/index.html
-:'''Ehime Drosophila Species Stock Center of Japan'''
-:A collection of wild-type strains of D. melanogaster and strains of some 30 species can be found at http://kyotofly.kit.ac.jp/ehime/
-:'''FlyTrap Stock Collection'''
-:GFP protein trap lines from the FlyTrap project can be obtained at Yale University, USA at http://flytrap.med.yale.edu/
-:'''FlyView Stock Collection'''
-:Enhancer trap lines from the FlyView project can be obtained at University of Muenster, Germany at http://flyview.uni-muenster.de/
-:'''Kyorin-Fly'''
-:A collection of mutant and wildtype stocks of Drosophila species, especially the Drosophila ananassae species subgroup, D. auraria complex, and D. hydei. http://kyotofly.kit.jp/cgi-bin/kyorin/index.cgi
-:'''Tübingen Drosophila Stock Collection'''
-:A list of approximately 2,000 Drosophila stocks at the Max-Planck-Institute for Developmental Biology.
-:'''UC San Diego Drosophila Stock Center'''
-:Approximately 270 different Drosophila species at University of San Diego, USA can be obtained at https://stockcenter.ucsd.edu/info/welcome.php
-:'''University of Cambridge FlyProt project'''
-:Annotations, expression patterns and sequence data for the YFP protein trap lines from the FlyProt project can be viewed on the Flannotator at http://www.flyprot.org. Stocks are available from the Kyoto Stock Center.
-=Vectors and Constructs=
-http://flybase.org/static_pages/lists/vectors.html
-=Listing of all resources=
-==Drosophila Network Resources==
-===Comparative Analyses and Genome Databases===
-    Assembly/Alignment/Annotation of 12 related Drosophila species:
-    »Assembly/Alignment/Annotation, LBNL, USA
-    BDGP Single Nucleotide Polymorphism (SNP) Project:
-    »Berkeley Drosophila Genome Project, University of California, Berkeley, USA
-    Berkeley Drosophila Genome Project (BDGP):
-    »BDGP, University of California, Berkeley, USA
-    BDTNP, ChIP/chip in vivo DNA binding data:
-    »Berkeley Drosophila Transcription Network Project, University of California, Berkeley, USA
-    CluSTr protein sequence similarity analysis of Drosophila:
-    »CluSTr proteome analysis, EBI, UK
-    D. pseudoobscura genome project:
-    »Human Genome Sequencing Center, Baylor College of Medicine, USA
-    D. simulans genome project:
-    »Genome Sequencing Center, Washington University, USA
-    D. yakuba genome project:
-    »Genome Sequencing Center, Washington University, USA
-    D.melanogaster UCSC Genome Browser Gateway:
-    »University of California, Santa Cruz, USA
-    DDBJ, the DNA Data Bank of Japan:
-    »DDBJ, National Institute of Genetics, Mishima, Japan
-    DNase I Footprint Database:
-    »University of Manchester Bioinformatics Resources, University of Manchester, UK
-    Drosophila Heterochromatin Genome Project (DHGP):
-    »DHGP, Lawrence Berkeley National Laboratory, USA
-    Drosophila melanogaster Exon Database (DEDB):
-    »DEDB, National University of Singapore
-    Drosophila Polymorphism Database:
-    »Drosophila Polymorphism Database, Univ. Autònoma de Barcelona, Spain
-    Drosophila Population Genomic Project (DPGP):
-    »DPGP, University of California, Davis, USA
-    Drosophila simulans and yakuba sequencing projects:
-    »DPGP, University of California, Davis, USA
-    Drosophilidae Taxonomic Database:
-    »Drosophilidae Taxonomic Database, Japan
-    Drosophilidae Taxonomy - Collection of Papers:
-    »Japan Drosophila Database (JDD) on Taxonomy, Japan
-    DRSC, Drosophila RNAi Screening Center:
-    »DRSC, Harvard Medical School, Boston, MA, USA
-    EMBL Nucleotide Sequence Database:
-    »EMBL Nucleotide Sequence Database, EBI, Cambridge, UK
-    EPD, the Eukaryotic Promoter Database:
-    »EPD, Epalinges s/Lausanne, Switzerland
-    euGenes, Genomic Information for Eukaryotic Organisms, including Drosophila:
-    » euGenes, Indiana University, USA
-    EvoPrinter, Identification of Evolutionarily Resilient DNA Sequences
-    »NINDS, NIH, Bethesda MD, USA
-    FLIGHT, Fly database for the Integration of Genomic and High-Throughput data:
-    »FLIGHT Database, Ludwig Institute for Cancer Research, London, UK
-    FlyAtlas, the Drosophila adult gene expression atlas:
-    »FlyAtlas, University of Glasgow, UK
-    FlyMine, an integrated database for Drosophila & Anopheles genomics:
-    »University of Cambridge, United Kingdom
-    FlyPhenomics, phenotypic differences between species of the D. melanogaster subgroup:
-    »FlyPhenomics, Paris, France
-    FlySNP Project:
-    »FlySNP, Austrian Academy of Sciences, Austria
-    GenBank,the NIH genetic sequence database:
-    »GenBank, NCBI, Bethesda, MD USA
-    GenomeRNAi, Heidelberg, a database of RNA interference (RNAi) screens in cultured Drosophila cells:
-    »GenomeRNAi, DKFZ, Heidelberg, Germany
-    GEO, NCBI's Gene Expression Omnibus:
-    »GEO, NCBI, Bethesda, MD USA
-    GPCRDB, information system for G protein-coupled receptors (GPCRs):
-    »GPCRDB, The GPCRDB (G Protein-Coupled Receptor Data Base) partnership
-    Homophila, Human Disease to Drosophila Gene Database:
-    » Homophila, San Diego, USA
-    InParanoid, Eukaryotic Ortholog Groups:
-    »InParanoid, Karolinska Institute, Sweden
-    InterPro protein domain analysis of Drosophila:
-    »InterPro proteome analysis, EBI, UK
-    MANTiS a phylogenetic framework for multi-species genome comparisons:
-    »MANTiS, Université Libre de Bruxelles, Belgium
-    MEROPS, an information resource for peptidases:
-    »MEROPS, The Sanger Institute, Cambridge, UK
-    miRBase, microRNA data:
-    »miRBase, The Sanger Institute, Cambridge, UK
-    miRNA, Target Gene Prediction:
-    »miRNA - Target Prediction, EMBL, Heidelberg, Germany
-    MitoDrome, Drosophila melanogaster nuclear genes encoding for mitochondrial proteins:
-    »MitoDrome, Bari, Italy
-    Mitotic Spindle Assembly Database:
-    »Genes Required for Mitotic Spindle Assembly in S2 cells, University of California, San Francisco, USA
-    NHGRI Drosophila Genome Sequencing Proposals, Status of Sequencing:
-    »National Human Genome Research Institute, Bethesda, MD, USA
-    Panther protein classification system:
-    »Panther Protein Classification System, Applied Biosystems & Celera, USA
-    PDB, Protein Data Bank:
-    »PDB, The Research Collaboratory for Structural Bioinformatics (RCSB) consortium
-    PhospoPep - phosphorylation site data from D. melanogaster cell lines:
-    »The Aebersold group at the ETH in collaboration with the FGCZ in Switzerland, and the ISB, USA.
-    Proteome analysis of Drosophila:
-    »Proteome analysis, EBI, UK
-    PubMed, Biomedical literature citations and abstracts:
-    »PubMed, NCBI, Bethesda, MD USA
-    REDfly, Regulatory Element Database for Drosophila:
-    »REDfly, University at Buffalo, New York, USA
-    Rfam, RNA families database of alignments and CMs:
-    »Rfam, the Sanger Institute, Cambridge, UK and Janelia Farm, Ashburn, VA, USA
-    Sebida, Sex Bias Database:
-    »Sebida, MPI Martinsried, Germany
-    TaxoDros, the database on Taxonomy of Drosophilidae:
-    »TaxoDros, University of Zurich, Switzerland
-    The Drosophila Transcription Factor Database:
-    »FlyTF.org, MRC Cambridge, UK
-    The McGill Drosophila melanogaster Genome Project:
-    »McGill Drosophila Genome Project, Canada
-    TRANSFAC, A database of transcription factors and their binding sites:
-    »TRANSFAC, Braunschweig, Germany
-    TransTerm, a Translational Signal Database:
-    »TransTerm, Dunedin, New Zealand
-    UniProtKB, a comprehensive catalog of information on proteins:
-    »UniProtKB, The UniProt Consortium
-    Whole genome comparative analysis of D. melanogaster and D. pseudoobscura:
-    »Whole genome analysis, LBNL, USA
-===Drosophila Material Resources===
-[[Category:Public Resources]]

Difference between revisions of "FlyBase:Resources"

Latest revision as of 17:34, 13 February 2014

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