Difference between revisions of "FlyBase:Help"

From FlyBase Wiki
Jump to navigation Jump to search
 
(102 intermediate revisions by 9 users not shown)
Line 1: Line 1:
−
====Tools====
+
__TOC__
 +
 
 +
 
 +
=FlyBase Help=
 +
 
 +
==[[FlyBase:FlyBase Help Index | FlyBase Help Index]]==
 +
 
 +
==Tools==
 
* [[FlyBase:Tools Overview|Tools Overview]]
 
* [[FlyBase:Tools Overview|Tools Overview]]
−
* [[FlyBase:GBrowse Tracks|GBrowse Tracks]]
+
* [[FlyBase:JBrowse|FlyBase JBrowse Help]]
 +
* [[FlyBase:JBrowse Tracks|JBrowse Tracks]]
 +
* [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]]
 +
 
 +
==Downloads==
 +
* [[FlyBase:Downloads Overview|Downloads Overview]]
 +
* [http://flybase.org/cgi-bin/get_static_page.pl?file=bulkdata7.html&title=Current%20Release Precomputed data files for the current release]
 +
* [http://flybase.org/cgi-bin/get_static_page.pl?file=archivedata3.html&title=Archived%20Releases Archived data files for recent releases]
 +
* [[Media:DmelMapTable.160615c.xlsx | Map conversion]]
 +
:'''FTP site'''
 +
::*[ftp://ftp.flybase.org/releases/ Index of releases]
 +
::*[ftp://ftp.flybase.org/genomes/ Index of Genomes]
 +
 
 +
==External Resource Links==
 +
* [[FlyBase:External Resources|All External Resources]]
 +
** [[FlyBase:Drosophila Network Resources| Curated list of Drosophila Online Resources]]
 +
** [[FlyBase:Drosophila Material Resources|Curated list of Drosophila Material Resources (Reagents)]]
 +
** [[FlyBase:CRISPR|CRISPR links page]]
 +
** [[FlyBase:ScRNA-Seq|ScRNA-Seq links page]]
 +
** [[FlyBase:RNAi|RNAi links page]]
 +
** [[FlyBase:Stocks|Stocks links page]]
 +
** [[FlyBase:Antibodies|Antibodies links page]]
 +
** [[FlyBase:Neuroscience|Neuroscience links page]]
 +
** [[FlyBase:Model Organism Databases|Model Organism Databases links page]]
 +
** [[FlyBase:Images|Images links page]]
 +
** [[FlyBase:Maps|Maps links page]]
 +
** [http://www.flyrnai.org/tools/protocols/web/| DRSC Protocols page]
 +
** [[FlyBase:Papers with technical advances|Papers with technical advances links page]]
 +
** [[FlyBase:GSEA|Gene Set Enrichment Tools links page]]
 +
 
 +
==Community==
 +
 
 +
* [[FlyBase:Drosophila Community Service Award| Drosophila Community Service Award]]
 +
* [http://flybase.org/submission/publication/ Fast Track Your Paper]
 +
* [[FlyBase:Fly Lab List| Fly Lab List]]
 +
* [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]]
 +
* [https://groups.google.com/forum/#!forum/flybase FlyBase Forum]
 +
* [https://flybase.org/community/newsletter FlyBase Newsletter]
 +
* [http://www.bio.net/hypermail/dros/ bionet.dros]
 +
* [[FlyBase:Fly Board| Fly Board]]
 +
* [[FlyBase:NIH Funding| NIH Funding]]
 +
* [https://flyslackco.slack.com/ FlySlack]
 +
* [[FlyBase:Gene_Snapshots| Gene Snapshots]]
 +
* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)]
 +
 
 +
==Species==
 +
* [[FlyBase:Phylogeny|Phylogeny]]
 +
* [http://flybase.org/static/sequenced_species Original 12 Sequenced Drosophila Species]
 +
* [http://flybase.org/maps/synteny Synteny Table for Original 12 Sequenced Drosophila Species]
 +
* [http://flybase.org/static/Drosophilidae Color Illustrations of more than 100 Drosophila Species]
 +
* [[FlyBase:Abbreviations|Abbreviations]]
 +
 
 +
==About FlyBase==
 +
* [http://flybase.org/cgi-bin/get_static_page.pl?file=release_notes.html&title=Release%20Notes Release Notes]
 +
* [http://flybase.org/static/new-this-release New in Release]
 +
* [http://flybase.org/static/release_schedule Release Schedule]
 +
* [[FlyBase:FlyBase Positions| FlyBase Positions]]
 +
* [[FlyBase:About#Citing_FlyBase| Citing FlyBase]]
 +
* [[FlyBase:About#FlyBase_Consortium| FlyBase Consortium]]
 +
* [[FlyBase:Overview| FlyBase Overview]]
 +
* [[FlyBase:About#FlyBase_Publications| FlyBase Publications]]
 +
* [[FlyBase:About#FlyBase_Support| FlyBase Support]]
 +
* [[FlyBase:FlyBase Website Access Fee FAQ| FlyBase Website Access Fee FAQ]]
 +
 
 +
==Help==
 +
* [[FlyBase:New to Flies?|Useful links if you are new to Flies]]
 +
* [https://wiki.flybase.org/wiki/FlyBase:Tweetorial FlyBase Tweetorials]
 +
* [https://www.youtube.com/channel/UCG-KSNq46vkezAwbrVQojYA/videos FlyBase Video Tutorials]
 +
* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
 +
* [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]]
 +
* [[FlyBase:Author Guidelines|Author Guidelines]]
 +
* [[FlyBase:Personal communications to FlyBase|Personal communications to FlyBase]]
 +
* [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase pamphlets, powerpoints and posters]]
 +
* [https://flybase.org/contact/email Contact FlyBase]
 +
* [[FlyBase:Vectors and Constructs|Commonly used vectors and constructs]]
 +
* [[FlyBase:FAQ|FAQs]]
 +
 
 +
==FlyBase Report Help==
 +
 
 +
'''FlyBase Report Help and Documentation'''
 +
 
 +
* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
 +
 
 +
==Documentation==
 +
 
 +
'''Nomenclature'''
 +
 
 +
*[[FlyBase:Nomenclature|Nomenclature Guidelines]]
 +
*[[FlyBase:Nontraditional alleles |Nontraditional alleles]]
 +
 
 +
'''Gene Model Annotation'''
  
−
====Files====
+
*[[FlyBase:Gene Model Annotation Guidelines|Gene Model Annotation Guidelines (2012)]]
−
*[[FlyBase:FilesOverview|Files Overview]]
+
*[[FlyBase:Gene_Model_Annotation_Guidelines#G.7._Gene_Model_Annotation_Guidelines_.282007.29|Gene Model Annotation Guidelines (2007)]]
 +
*[[FlyBase:Annotation Evidence Score|What does the annotation evidence score mean?]]
  
−
====Species====
+
'''GO Annotation'''
−
*[http://flybase.org/static_pages/docs/abbreviations.html Abbreviations]
 
−
====Documents====
 
−
*[[FlyBase:About|About FlyBase]]
 
  
−
*[[FlyBase:RefMan F.|Links to and from FlyBase (RefMan F)]]
+
*[[FlyBase:Gene Ontology (GO) Annotation |Classification of Gene Products using Gene Ontology (GO) terms]]
  
−
*[[FlyBase:RefMan G.|FlyBase Curation Documentation (RefMan G)]]
+
'''Computed Fields'''
−
**[[FlyBase:Nontraditional alleles |G.1. Nontraditional alleles]]
 
−
**[[FlyBase:Controlled vocabularies used by FlyBase |G.2. Controlled Vocabularies used by FlyBase]]
 
−
**[[FlyBase:Gene Ontology (GO) Annotation |G.3. Classification of Gene Products using Gene Ontology (GO) terms]]
 
−
**[[FlyBase:Computed Feature type of genes | G.4. Computed Feature type of genes]]
 
−
**[[FlyBase:Computed cytological data |G.5. Computed cytological data]]
 
−
**[[FlyBase:Personal communications to FlyBase |G.6. Personal communications to FlyBase]]
 
−
**[[FlyBase:Gene_Model_Annotation_Guidelines#G.7._Gene_Model_Annotation_Guidelines_.282007.29|G.7. Gene Model Annotation Guidelines (2007)]]
 
−
**[[FlyBase:Gene Model Annotation Guidelines|G.8. Gene Model Annotation Guidelines (2012)]]
 
−
**[[FlyBase:Annotation Evidence Score|G.9. What does the annotation evidence score mean?]]
 
−
*[[FlyBase:Nomenclature|Nomenclature]]
 
−
*[http://flybase.org/static_pages/docs/release_notes.html Release Notes]
 
  
−
====Resources====
+
*[[FlyBase:Computed Feature type of genes | Computed Feature type of genes]]
−
* [[FlyBase:All Resources|All Resources]]
+
*[[FlyBase:Computed cytological data | Computed cytological data]]
−
** [[FlyBase:Drosophila Network Resources|Drosophila Network Resources]]
 
−
** [[FlyBase:Drosophila Material Resources|Drosophila Material Resouces (Reagents)]]
 
−
* [[FlyBase:Model Organism Databases|Model Organism Databases]]
 
−
* [[FlyBase:Stock Collections|Stock Collections]]
 
−
* [http://flybase.org/static_pages/lists/vectors.html Vectors and Constructs]
 
−
*Other Links:
 
−
**[http://www.fruitfly.org/ BDGP]
 
−
**[https://dgrc.cgb.indiana.edu/Home DGRC]
 
−
**[http://www.ou.edu/journals/dis/byissue.html DIS by Issue]
 
−
**[http://www.flyexpress.net/ FlyExpress]
 
−
**[http://www.sdbonline.org/sites/fly/aimain/1aahome.htm Interactive Fly]
 
−
**[http://www.modencode.org/ modENCODE]
 
−
**[http://www.textpresso.org/fly/ Textpresso for Fly]
 
  
−
====News====
+
'''Links to and from FlyBase'''
−
*[[FlyBase:FlyBase News|FlyBase News]]
 
−
*[http://flybase.org/forums/ FlyBase Forum]
 
−
*[[FlyBase:FlyBase Positions|FlyBase Positions]]
 
−
*[[FlyBase:Meetings|Meetings]]
 
−
*[[FlyBase:Courses|Courses]]
 
−
*[[FlyBase:Funding|Funding]]
 
−
*[http://www.bio.net/hypermail/dros/ bionet.dros]
 
  
−
====Help====
+
*[[FlyBase:RefMan F.|Instructions for creating links to and from FlyBase]]
−
*[http://flybase.org/static_pages/search/site_search.html Google<sup>TM</sup> FlyBase]
 
−
*[http://flybase.org/static_pages/docs/Site_Map2.html Site Map]
 
−
*[[FlyBase:FAQ|FAQ]]
 
−
*[[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase Guides: Pamphlets and Powerpoints]]
 
−
*[https://www.youtube.com/user/FlyBaseDB Video Tutorials]
 
−
*[http://flybase.org/static_pages/newhelp/report_help.html Report Help]
 
−
*[[FlyBase:New to Flies?|New to Flies?]]
 
−
*[[FlyBase:Personal communications to FlyBase |Personal communications to FlyBase]]
 
−
*[[FlyBase:Author Guidelines|Author Guidelines]]
 
−
*[http://flybase.org/cgi-bin/mailto-fbhelp.html Contact FlyBase]
 
  
−
====General====
+
==General==
−
*[[FlyBase:Zotero support in FlyBase|Zotero support in FlyBase]]
 
−
*[[FlyBase:Fly Board|Fly Board and White Papers]]
 
  
 +
* [[FlyBase:Fly Board|Fly Board and White Papers]]
  
 
[[Category:Help]]
 
[[Category:Help]]
 +
 +
 +
==Tools for Archived Instances of FlyBase==
 +
 +
 +
 +
{| class="wikitable" style="text-align: center; color: red; margin: auto;"
 +
!colspan="1"|Warning
 +
|-
 +
|rowspan="1"|Information about GBrowse is only relevant to users of an [http://flybase.org/downloads/archivedata archived] instance of FlyBase earlier than FB2022_05.
 +
For users working with the current release at [http://flybase.org/ flybase.org], please see our page about [[FlyBase:JBrowse]], the genome viewer that replaced GBrowse.
 +
|}
 +
 +
* [[FlyBase:GBrowse|FlyBase GBrowse Help]]
 +
* [[FlyBase:GBrowse Tracks|GBrowse Tracks]]

Latest revision as of 17:44, 30 October 2024


FlyBase Help

FlyBase Help Index

Tools

Downloads

FTP site

External Resource Links

Community

Species

About FlyBase

Help

FlyBase Report Help

FlyBase Report Help and Documentation

Documentation

Nomenclature

Gene Model Annotation

GO Annotation

Computed Fields

Links to and from FlyBase

General


Tools for Archived Instances of FlyBase

Warning
Information about GBrowse is only relevant to users of an archived instance of FlyBase earlier than FB2022_05.

For users working with the current release at flybase.org, please see our page about FlyBase:JBrowse, the genome viewer that replaced GBrowse.

Retrieved from "https://wiki.flybase.org/mediawiki/index.php?title=FlyBase:Help&oldid=173072"